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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0376400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycoside hydrolase, family 18 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.35 (0.0287) R2 : 0.876
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.62 (0.112) R2dC : 0.129 R2C : 0.459
β3 : 2.94 (0.114) R2dE : 0.403 R2E : 0.739
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.344 (0.0604) R2dN8 : 0.0114 R2N8 : 0.00948
σ : 0.538
deviance : 133.4
__
_____
C
peak time of C : 18.3
E
wheather : wind
threshold : 1.142
memory length : 242
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 11.1
open length of G : 6.28

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
117.21 0.509 4.35 0.536 1.57 3.1 1.72 0.396 0.387 18.6 1.109 256 11 6.18
117.42 0.505 4.35 0.536 1.57 3.09 1.98 -- 0.385 18.6 1.145 255 11 6.22
121.02 0.512 4.34 0.528 1.59 3.06 -- 1.5 0.402 18.4 1.1 255 11 6.18
126.83 0.525 4.35 0.508 1.65 2.98 -- -- 0.392 18.3 1.2 255 11 6.18
149.95 0.57 4.31 0.495 -- 4.15 -- 1.47 0.347 -- 0.03895 343 10.5 6.95
250.31 0.742 4.35 0.536 3.92 -- 1.13 -- 0.502 17.3 -- -- -- --
253.47 0.746 4.35 0.535 3.92 -- -- -- 0.507 17.3 -- -- -- --
153.33 0.577 4.32 0.441 -- 4.3 -- -- 0.364 -- 0.6399 357 10.4 6.88
133.4 0.538 4.35 -- 1.62 2.94 -- -- 0.344 18.3 1.142 242 11.1 6.28
1057.46 1.52 4.3 0.399 -- -- -- -- 0.409 -- -- -- -- --
261 0.756 4.36 -- 3.92 -- -- -- 0.447 17.3 -- -- -- --
158.44 0.586 4.32 -- -- 4.31 -- -- 0.313 -- 0.627 357 10.4 6.89
1061.66 1.52 4.31 -- -- -- -- -- 0.365 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 118.30 wind 1.0 270 > th dose independent rect. 11 6
2 119.43 humidity 50.0 270 > th dose independent rect. 17 18
3 120.67 wind 9.0 270 < th dose independent rect. 17 18
4 120.83 precipitation 0.1 270 < th dose independent rect. 11 6
5 120.83 precipitation 0.1 270 < th dose dependent rect. 11 6
6 121.10 temperature 10.0 270 > th dose independent rect. 11 6
7 121.10 atmosphere 1015.0 270 < th dose independent rect. 11 6
8 121.10 temperature 10.0 270 > th dose independent rect. 17 18
9 121.34 atmosphere 995.0 270 > th dose independent rect. 17 18
10 121.69 wind 9.0 270 < th dose independent rect. 11 6
11 121.69 radiation 1.0 270 > th dose independent rect. 11 6
13 123.83 precipitation 0.1 270 < th dose independent rect. 17 18
14 123.83 precipitation 0.1 270 < th dose dependent rect. 17 18
32 129.35 atmosphere 995.0 270 > th dose independent rect. 11 6
39 130.79 temperature 15.0 270 > th dose independent rect. 5 7
41 131.44 precipitation 0.1 270 < th dose independent rect. 5 7
42 131.44 precipitation 0.1 270 < th dose dependent rect. 5 7
46 131.73 wind 9.0 270 < th dose independent rect. 5 7
48 131.77 radiation 1.0 270 > th dose independent rect. 4 7
61 131.89 atmosphere 995.0 270 > th dose independent rect. 5 7
62 131.89 atmosphere 1015.0 270 < th dose independent rect. 5 7
63 131.89 temperature 10.0 270 > th dose independent rect. 12 17
65 132.17 wind 9.0 270 < th dose independent rect. 12 17
66 132.29 precipitation 0.1 270 < th dose independent rect. 12 17
67 132.29 precipitation 0.1 270 < th dose dependent rect. 12 17
70 132.34 radiation 40.0 270 < th dose dependent rect. 21 10
86 132.68 temperature 15.0 270 > th dose independent rect. 6 5
89 132.78 radiation 1.0 270 > th dose independent rect. 10 20
96 133.34 humidity 90.0 270 < th dose independent rect. 11 6
97 133.36 precipitation 0.1 270 < th dose independent rect. 6 5
98 133.36 precipitation 0.1 270 < th dose dependent rect. 6 5
104 133.64 wind 9.0 270 < th dose independent rect. 6 5
107 133.68 atmosphere 995.0 270 > th dose independent rect. 6 5
108 133.68 atmosphere 1015.0 270 < th dose independent rect. 6 5
109 133.68 temperature 10.0 270 > th dose independent rect. 11 19
113 133.84 precipitation 0.1 270 < th dose independent rect. 11 19
114 133.84 precipitation 0.1 270 < th dose dependent rect. 11 19
124 134.26 wind 9.0 270 < th dose independent rect. 11 19
130 134.71 humidity 50.0 270 > th dose independent rect. 6 5
135 135.00 temperature 10.0 270 > th dose dependent rect. 11 6
137 135.13 temperature 10.0 270 > th dose independent rect. 22 9
138 135.13 temperature 30.0 270 < th dose independent rect. 22 9
139 135.13 humidity 50.0 270 > th dose independent rect. 22 9
141 135.13 atmosphere 995.0 270 > th dose independent rect. 22 9
142 135.13 radiation 40.0 270 < th dose independent rect. 22 9
143 135.13 temperature 10.0 270 > th dose independent rect. 7 15
145 135.16 wind 9.0 270 < th dose independent rect. 22 9
150 135.23 radiation 20.0 270 < th dose independent rect. 16 9
182 136.05 radiation 1.0 90 > th dose independent rect. 13 16
195 136.13 temperature 30.0 270 < th dose independent rect. 17 18
199 136.45 humidity 50.0 270 > th dose independent rect. 5 7
206 136.59 wind 9.0 270 < th dose independent rect. 7 15
226 138.02 radiation 40.0 270 < th dose dependent rect. 16 9
227 138.12 temperature 10.0 270 > th dose dependent rect. 12 4
229 138.20 radiation 30.0 270 < th dose dependent rect. 16 7
237 138.35 precipitation 0.1 270 < th dose independent rect. 22 9
238 138.35 precipitation 0.1 270 < th dose dependent rect. 22 9
263 138.97 atmosphere 995.0 270 > th dose independent rect. 12 4
271 139.33 radiation 1.0 270 > th dose independent rect. 7 3
291 139.73 temperature 15.0 270 > th dose independent rect. 7 3
306 139.82 temperature 10.0 270 > th dose independent rect. 16 9
307 139.82 radiation 40.0 270 < th dose independent rect. 16 9
308 139.82 temperature 10.0 270 > th dose independent rect. 1 15
309 139.82 atmosphere 1015.0 270 < th dose independent rect. 1 15
335 140.16 precipitation 0.1 270 < th dose independent rect. 7 3
336 140.16 precipitation 0.1 270 < th dose dependent rect. 7 3
338 140.23 wind 9.0 270 < th dose independent rect. 16 9
339 140.23 humidity 50.0 270 > th dose independent rect. 16 9
341 140.25 radiation 1.0 90 < th dose dependent sin 16 NA
348 140.44 atmosphere 995.0 270 > th dose independent rect. 7 3
349 140.44 atmosphere 1015.0 270 < th dose independent rect. 7 3
351 140.44 temperature 10.0 270 > th dose independent rect. 10 21
352 140.45 wind 9.0 270 < th dose independent rect. 7 3
360 140.59 humidity 50.0 270 > th dose independent rect. 7 3
363 140.77 humidity 50.0 270 > th dose independent rect. 16 7
366 140.90 wind 9.0 270 < th dose independent rect. 1 15
394 141.24 precipitation 0.1 270 < th dose independent rect. 10 21
395 141.24 precipitation 0.1 270 < th dose dependent rect. 10 21
407 141.40 wind 9.0 270 < th dose independent rect. 10 21
408 141.41 atmosphere 1015.0 270 < th dose independent rect. 22 9
409 141.41 temperature 10.0 270 > th dose dependent rect. 6 5
429 142.03 radiation 1.0 90 < th dose independent sin 16 NA
433 142.22 wind 1.0 270 > th dose independent rect. 13 2
469 143.09 wind 1.0 270 > th dose independent rect. 6 5
485 143.69 precipitation 0.1 270 < th dose independent rect. 7 15
487 143.69 precipitation 0.1 270 < th dose dependent rect. 7 15
488 143.70 atmosphere 1015.0 270 < th dose independent rect. 7 14
496 144.00 wind 1.0 270 > th dose independent rect. 5 7
504 144.17 temperature 10.0 270 > th dose independent rect. 13 2
506 144.17 atmosphere 1010.0 270 < th dose independent rect. 13 2
508 144.17 temperature 10.0 270 > th dose independent rect. 15 22
518 144.28 precipitation 0.1 270 < th dose independent rect. 1 15
519 144.28 precipitation 0.1 270 < th dose dependent rect. 1 15
537 144.65 radiation 1.0 90 > th dose independent sin 16 NA
540 144.70 atmosphere 995.0 270 > th dose independent rect. 16 9
546 144.99 precipitation 0.1 270 < th dose independent rect. 13 2
547 144.99 precipitation 0.1 270 < th dose dependent rect. 13 2
548 145.01 wind 9.0 270 < th dose dependent rect. 6 5
551 145.05 wind 1.0 270 > th dose independent rect. 12 17
555 145.18 atmosphere 1015.0 270 < th dose independent rect. 12 17
559 145.34 atmosphere 995.0 270 > th dose independent rect. 12 17
568 145.60 atmosphere 1015.0 270 < th dose independent rect. 11 19
570 145.67 temperature 30.0 270 < th dose independent rect. 16 7
577 145.71 atmosphere 995.0 270 > th dose independent rect. 1 15
589 145.99 atmosphere 1015.0 270 < th dose independent rect. 23 18
592 146.09 temperature 10.0 270 > th dose independent rect. 17 6
596 146.09 temperature 10.0 270 > th dose independent rect. 23 18
598 146.12 wind 9.0 270 < th dose independent rect. 17 6
610 146.36 atmosphere 995.0 270 > th dose independent rect. 13 2
611 146.38 temperature 10.0 270 > th dose dependent rect. 7 3
625 146.67 atmosphere 995.0 270 > th dose independent rect. 17 6
631 146.88 wind 9.0 270 < th dose independent rect. 23 18
649 147.26 wind 9.0 270 < th dose dependent rect. 7 3
656 147.40 atmosphere 995.0 270 > th dose independent rect. 11 19
671 147.72 wind 1.0 270 > th dose independent rect. 17 6
674 147.75 wind 1.0 270 > th dose independent rect. 17 18
708 148.61 wind 1.0 270 > th dose independent rect. 7 3
710 148.67 temperature 10.0 1440 > th dose independent rect. 14 5
715 148.67 temperature 10.0 1440 > th dose independent rect. 19 19
718 148.67 atmosphere 995.0 1440 > th dose independent rect. 19 19
727 148.88 humidity 50.0 270 > th dose dependent rect. 22 9
732 148.96 precipitation 0.1 270 < th dose independent rect. 23 18
733 148.96 precipitation 0.1 270 < th dose dependent rect. 23 18
757 149.29 humidity 90.0 90 < th dose independent rect. 7 6
758 149.29 radiation 40.0 270 < th dose independent rect. 17 18
760 149.30 precipitation 0.1 270 < th dose independent rect. 16 9
761 149.30 precipitation 0.1 270 < th dose dependent rect. 16 9
769 149.36 wind 1.0 270 > th dose dependent rect. 12 4
792 149.75 radiation 1.0 270 > th dose independent sin 7 NA
802 149.87 wind 1.0 270 > th dose independent rect. 16 8
807 149.93 humidity 50.0 270 > th dose independent rect. 12 4
821 150.13 atmosphere 995.0 270 > th dose independent rect. 6 16
833 150.40 humidity 50.0 270 > th dose independent rect. 13 2
837 150.50 precipitation 0.1 270 < th dose independent rect. 17 6
838 150.50 precipitation 0.1 270 < th dose dependent rect. 17 6
840 150.52 temperature 30.0 270 < th dose independent rect. 7 3
849 150.62 radiation 1.0 270 < th dose independent rect. 22 16
853 150.77 temperature 20.0 10 > th dose independent rect. 8 5
913 151.57 temperature 30.0 270 < th dose independent rect. 6 5
938 151.76 radiation 40.0 270 < th dose independent rect. 18 16
939 151.79 radiation 40.0 270 < th dose independent rect. 7 3
962 152.06 wind 9.0 10 < th dose independent rect. 8 5
985 152.13 wind 1.0 270 > th dose dependent rect. 11 6
995 152.30 radiation 1.0 270 < th dose independent sin 7 NA