BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0376400 Os04g0376400|Os04g0376400
(479 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G19810.1 | chr4:10764151-10765753 REVERSE LENGTH=380 148 5e-36
AT4G19770.1 | chr4:10753310-10754181 REVERSE LENGTH=262 142 3e-34
AT4G19800.1 | chr4:10760830-10762104 REVERSE LENGTH=399 134 1e-31
AT4G19760.1 | chr4:10750381-10752028 FORWARD LENGTH=370 133 2e-31
AT4G19750.1 | chr4:10745682-10747127 REVERSE LENGTH=363 129 4e-30
AT4G19820.1 | chr4:10767436-10768614 REVERSE LENGTH=367 128 7e-30
AT4G19720.1 | chr4:10730363-10731695 REVERSE LENGTH=364 118 7e-27
AT4G19730.1 | chr4:10733864-10734975 REVERSE LENGTH=333 101 1e-21
AT4G19740.1 | chr4:10739567-10740302 REVERSE LENGTH=212 87 3e-17
>AT4G19810.1 | chr4:10764151-10765753 REVERSE LENGTH=380
Length = 379
Score = 148 bits (374), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 98/269 (36%), Positives = 134/269 (49%), Gaps = 29/269 (10%)
Query: 148 IGAAVKVARENGFDGLDVAWRFPASAVEMAEFGFLVAEWRAAV---------PRGFLLTA 198
I ++++VAR GF GLD+ W +P+SA EM FG L+ EWR+AV PR LL A
Sbjct: 120 IDSSIRVARSYGFHGLDLDWEYPSSATEMTNFGTLLREWRSAVVAEASSSGKPR-LLLAA 178
Query: 199 TVYFSNHVFDAPFAGVDYPSETVARSLDWVNVMAFGLRPPGXXXXXXXXXXXPLYDRASH 258
V++SN+ + V YP VA SLDWVN+MA+ PG L+D ++
Sbjct: 179 AVFYSNNYYS-----VLYPVSAVASSLDWVNLMAYDFYGPGWSRVTGPPAA--LFDPSNA 231
Query: 259 Y-SASYGVVSWLDAGVPASKVVMGIPLYGRSWFLRNKANSGVGAPVVAAGPKQRGSNATG 317
S G SW+ AG+PA K V+G P YG +W L N + AP A GS
Sbjct: 232 GPSGDAGTRSWIQAGLPAKKAVLGFPYYGYAWRLTNANSHSYYAPTTGAAISPDGS---- 287
Query: 318 AMSYAEVQWLAATATRGSRAVITAYDNASVASYVSVGDVWVAFDGVAVVAEKLAFAARCG 377
+ Y +++ T Y++ V Y G W+ +D + K+ +A + G
Sbjct: 288 -IGYGQIRKFIV-----DNGATTVYNSTVVGDYCYAGTNWIGYDDNQSIVTKVRYAKQRG 341
Query: 378 LLGYFLWPVNYDDANLTVSRRASQVWTQT 406
LLGYF W V DD N +SR ASQ W T
Sbjct: 342 LLGYFSWHVGADD-NSGLSRAASQAWDAT 369
>AT4G19770.1 | chr4:10753310-10754181 REVERSE LENGTH=262
Length = 261
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 87/254 (34%), Positives = 129/254 (50%), Gaps = 27/254 (10%)
Query: 148 IGAAVKVARENGFDGLDVAWRFPASAVEMAEFGFLVAEWRAAVPRG--------FLLTAT 199
I + + +AR GFDGLD+ W +P +A EM++F L+ EWR AV +LTAT
Sbjct: 12 ILSTISIARSYGFDGLDLDWEYPRNAAEMSDFAELLKEWRYAVQGEAYSSELPVLILTAT 71
Query: 200 VYFSNHVFDAPFAGVDYPSETVARSLDWVNVMAFGLRPPGXXXXXXXXXXXPLYDRASHY 259
VY+S++ + GV YP + ++ LDWVN+ A+ PG LY ++
Sbjct: 72 VYYSSN-----YNGVVYPVKFISELLDWVNIKAYDFYGPGCTEVTGPPAA--LYLQSDGP 124
Query: 260 SASYGVVSWLDAGVPASKVVMGIPLYGRSWFLRNKANSGVGAPVVAAGPKQRGSNATGAM 319
S GV W+DAG+PA K V+G P YG +W L + N G V GP + G +
Sbjct: 125 SGDSGVKDWIDAGLPAEKAVLGFPYYGWAWTLADPKNHGY--YVDTTGP---AISDDGEI 179
Query: 320 SYAEVQ-WLAATATRGSRAVITAYDNASVASYVSVGDVWVAFDGVAVVAEKLAFAARCGL 378
SY++++ W+ T +DN + Y G W+ +D + K+ +A + GL
Sbjct: 180 SYSQLKTWIV------DNKATTVHDNIVIGDYCYAGTTWIGYDSEESIVTKVIYAKQKGL 233
Query: 379 LGYFLWPVNYDDAN 392
LGYF W V DD +
Sbjct: 234 LGYFSWQVGGDDKS 247
>AT4G19800.1 | chr4:10760830-10762104 REVERSE LENGTH=399
Length = 398
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/252 (33%), Positives = 121/252 (48%), Gaps = 27/252 (10%)
Query: 148 IGAAVKVARENGFDGLDVAWRFPASAVEMAEFGFLVAEWRAAVP--------RGFLLTAT 199
I + + VAR GF GLD+ W +P + EM +FG L+ EWR+AV +LTA
Sbjct: 99 IQSTITVARSYGFHGLDLDWEYPRNEEEMYDFGKLLEEWRSAVEAESNSSGTTALILTAA 158
Query: 200 VYFSNHVFDAPFAGVDYPSETVARSLDWVNVMAFGLRPPGXXXXXXXXXXXPLYDRASHY 259
VY+S++ + GV YP ++ SLDW+N+MA+ PG LY
Sbjct: 159 VYYSSN-----YQGVPYPVLAISNSLDWINLMAYDFYGPGWSTVTGPPAS--LYLPTDGR 211
Query: 260 SASYGVVSWLDAGVPASKVVMGIPLYGRSWFLRNKANSGVGAPVVAAGPKQRGSNATGAM 319
S GV W +AG+PA K V+G P YG +W L + +G A GP G +
Sbjct: 212 SGDSGVRDWTEAGLPAKKAVLGFPYYGWAWTLADPDVNGYDANTT--GPAISDD---GEI 266
Query: 320 SYAEVQ-WLAATATRGSRAVITAYDNASVASYVSVGDVWVAFDGVAVVAEKLAFAARCGL 378
SY ++Q W+ +D+ V Y G W+ +D + K+ +A + GL
Sbjct: 267 SYRQLQTWIV------DNGATKVHDDMMVGDYCYAGTTWIGYDSEKSIVTKVIYAKQKGL 320
Query: 379 LGYFLWPVNYDD 390
LGYF W V DD
Sbjct: 321 LGYFSWHVGGDD 332
>AT4G19760.1 | chr4:10750381-10752028 FORWARD LENGTH=370
Length = 369
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 135/272 (49%), Gaps = 30/272 (11%)
Query: 148 IGAAVKVARENGFDGLDVAWRFPASAVEMAEFGFLVAEWRAAVPRG--------FLLTAT 199
I +++ +AR+ F GLD+AW +P++ VEM FG L+ EWRAAV LLTA
Sbjct: 116 IDSSIDIARKKDFYGLDLAWEYPSNDVEMTNFGKLLEEWRAAVVEESDKTNQLPLLLTAA 175
Query: 200 VYFSNHVFDAPFAGVDYPSETVARSLDWVNVMAFGLRPPGXXXXXXXXXXXPLYDRASH- 258
VY+S + GV+YP + +A +LD+VN+MA+ PG L+ S+
Sbjct: 176 VYYSPQ-----YDGVEYPVKAIADNLDFVNIMAYDFYGPGWSPVTGPPAA--LFHDPSNP 228
Query: 259 --YSASYGVVSWLD-AGVPASKVVMGIPLYGRSWFLRNKANSGVGAPVVAAGPKQRGSNA 315
S + G+ WLD A +P K V+G P G +W L + N+G A A GS
Sbjct: 229 AGRSGNSGLRKWLDEAKLPPKKAVLGFPYCGWAWTLEDAENNGYDAATDGAAISPDGS-- 286
Query: 316 TGAMSYAEVQWLAATATRGSRAVITAYDNASVASYVSVGDVWVAFDGVAVVAEKLAFAAR 375
++YA+++ T +D A + Y VG+ W+ +D + K+ +A
Sbjct: 287 ---ITYAKIRNYIV-----DNGAATFHDPAVIGFYCYVGNTWIGYDDNQSIVYKVKYAKF 338
Query: 376 CGLLGYFLWPVNYDDANLTVSRRASQVWTQTK 407
GLLGYF W V D N +SR AS W T+
Sbjct: 339 TGLLGYFSWHVGA-DYNCGLSRAASIAWDTTE 369
>AT4G19750.1 | chr4:10745682-10747127 REVERSE LENGTH=363
Length = 362
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 89/263 (33%), Positives = 130/263 (49%), Gaps = 28/263 (10%)
Query: 148 IGAAVKVARENGFDGLDVAWRFPASAVEMAEFGFLVAEWRAAVPRG--------FLLTAT 199
I +++ +AR+ F GLD+AW +P++ VEMA FG LV EWRAAV LLTA
Sbjct: 108 IDSSIDIARKKDFYGLDLAWEYPSNDVEMANFGKLVKEWRAAVVEESDRTNQLPLLLTAA 167
Query: 200 VYFSNHVFDAPFAGVDYPSETVARSLDWVNVMAFGLRPPGXXXXXXXXXXXPLYDRAS-- 257
VY+S + G +YP + +A +LD+VN+MA+ PG L+D ++
Sbjct: 168 VYYSPDYY-----GEEYPVQAIADNLDFVNIMAYDFYGPGWSPVTGPPAA--LFDPSNPA 220
Query: 258 HYSASYGVVSWLDAGVPASKVVMGIPLYGRSWFLRNKANSGVGAPVVAAGPKQRGSNATG 317
S G+ WL+A +PA K V+G G +W L + N+G A A GS
Sbjct: 221 GRSGDSGLSKWLEAKLPAKKAVLGFSYCGWAWTLEDAENNGYDAATDGAAISSDGS---- 276
Query: 318 AMSYAEVQWLAATATRGSRAVITAYDNASVASYVSVGDVWVAFDGVAVVAEKLAFAARCG 377
++YA+++ T +D A + Y VG W+ +D + K+ +A G
Sbjct: 277 -ITYAKIRNYII-----DNGAATFHDPAVIGFYCYVGTTWIGYDDNQSIVSKVRYAKLKG 330
Query: 378 LLGYFLWPVNYDDANLTVSRRAS 400
LLGYF W V D N +SR S
Sbjct: 331 LLGYFSWHVGA-DYNCGLSRAGS 352
>AT4G19820.1 | chr4:10767436-10768614 REVERSE LENGTH=367
Length = 366
Score = 128 bits (322), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 88/266 (33%), Positives = 131/266 (49%), Gaps = 29/266 (10%)
Query: 148 IGAAVKVARENGFDGLDVAWRFPASAVEMAEFGFLVAEWRAAV---------PRGFLLTA 198
I +++K+AR GF GLD+ W++P+ EM FG L+ EWR AV PR LLTA
Sbjct: 118 ISSSIKLARSCGFHGLDLNWKYPSITTEMDNFGKLLREWRLAVEAEARSSGKPR-LLLTA 176
Query: 199 TVYFSNHVFDAPFAGVDYPSETVARSLDWVNVMAFGLRPPGXXXXXXXXXXXPLYDR-AS 257
V++S + V +P VA SLDWVN++A+ G PLYD +
Sbjct: 177 AVFYSYSYY-----SVLHPVNAVADSLDWVNLVAYDFYESG--SSRVTCSPAPLYDPITT 229
Query: 258 HYSASYGVVSWLDAGVPASKVVMGIPLYGRSWFLRNKANSGVGAPVVAAGPKQRGSNATG 317
S GV +W AG+PA K V+G PLYG +W L + N A ++GP + G
Sbjct: 230 GPSGDAGVRAWTQAGLPAKKAVLGFPLYGYAWCLTDAKNHNYYAN--SSGP---AISPDG 284
Query: 318 AMSYAEVQWLAATATRGSRAVITAYDNASVASYVSVGDVWVAFDGVAVVAEKLAFAARCG 377
++ Y +++ Y++ V +Y W+ +D + K+ +A + G
Sbjct: 285 SIGYDQIRRFIV-----DNKATMVYNSNLVQNYCYAKKTWIGYDDNQSIVMKVKYAKQRG 339
Query: 378 LLGYFLWPVNYDDANLTVSRRASQVW 403
LLGYF W + DD N +SR S ++
Sbjct: 340 LLGYFSWHIGADD-NSRLSRAGSVLF 364
>AT4G19720.1 | chr4:10730363-10731695 REVERSE LENGTH=364
Length = 363
Score = 118 bits (296), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 83/265 (31%), Positives = 125/265 (47%), Gaps = 30/265 (11%)
Query: 148 IGAAVKVARENGFDGLDVAWRFPASAVEMAEFGFLVAEWRAAVPRG--------FLLTAT 199
I +A+ AR FDGLD+ W++P VEM FG L+ +WR A+ LLTA
Sbjct: 109 IWSAISSARYYRFDGLDLVWKYPKDDVEMRNFGQLLEQWREAIEDDAERTERMPLLLTAA 168
Query: 200 VYFSNHVFDAPFAGVDYPSETVARSLDWVNVMAFGLRPPGXXXXXXXXXXXPLYDRASHY 259
VY+S V+D+ V YP + + LDWVN++A+ P +
Sbjct: 169 VYYS-PVYDS----VSYPIREIKKKLDWVNLIAYDFYSSSTTIGPPAALFDPSNPKGP-- 221
Query: 260 SASYGVVSWLDAGVPASKVVMGIPLYGRSWFLRNKANSGVGAPVVAAGPKQRGSNATGAM 319
YG+ W+ AG+PA K V+G P G +W L + + A + ++A G++
Sbjct: 222 CGDYGLKEWIKAGLPAKKAVLGFPYVGWTWSLGSGND---------AATSRVATSAEGSI 272
Query: 320 SYAEVQWLAATATRGSRAVITAYDNASVASYVSVGDVWVAFDGVAVVAEKLAFAARCGLL 379
+Y +++ L +R V +D+ V Y G + +D V K+ +A + GLL
Sbjct: 273 NYDQIKRL--IVDHKARPV---FDSTVVGDYCFAGTSLIGYDDHQSVVAKVKYAKQKGLL 327
Query: 380 GYFLWPVNYDDANLTVSRRASQVWT 404
GYF W V DD N +SR S T
Sbjct: 328 GYFSWHVGADD-NFGLSRAGSSFCT 351
>AT4G19730.1 | chr4:10733864-10734975 REVERSE LENGTH=333
Length = 332
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 106/233 (45%), Gaps = 21/233 (9%)
Query: 148 IGAAVKVARENGFDGLDVAWRFPASAVEMAEFGFLVAEWRAAVPR--------GFLLTAT 199
I + + +AR NGF GLD+AW +P S EM +FG LV E RAAV LLTA
Sbjct: 111 IDSWIFIARSNGFHGLDLAWEYPYSDHEMTDFGNLVGELRAAVEAESRRSSKPTLLLTAA 170
Query: 200 VYFSNHVFDAPFAGVDYPSETVARSLDWVNVMAFGLRPPGXXXXXXXXXXXPLYDRASHY 259
VY+S + + YP + + SLDWVN++A+ P L+ +++
Sbjct: 171 VYYS-----SVYKTFTYPVQVMRESLDWVNIIAYDFYGP-VSSSKFTVPTAGLHVSSNNE 224
Query: 260 --SASYGVVSWLDAGVPASKVVMGIPLYGRSWFLRNKANSGVGAPVVAAGPKQRGSNATG 317
S G+ W+ G+P K V+G G +W L+N ++G A + + G
Sbjct: 225 GPSGDSGLKQWIKDGLPEKKAVLGFSYVGWAWTLQNDKDTGYNAAAAGVAKSEDDVSEDG 284
Query: 318 AMSYAEVQWLAATATRGSRAVITAYDNASVASYVSVGDVWVAFDGVAVVAEKL 370
+++YA++ R A YD V Y +W+ ++ V K+
Sbjct: 285 SINYAQINKF----IRDEEAA-KVYDPKVVGHYCFAKKIWIGYEDTQSVEAKV 332
>AT4G19740.1 | chr4:10739567-10740302 REVERSE LENGTH=212
Length = 211
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 99/213 (46%), Gaps = 43/213 (20%)
Query: 159 GFDGLDVAWRFPASAVEMAEFGFLVAEWRAAVP--------RGFLLTATVYFSNHVFDAP 210
GF GLD+AW +P + VEM FG L+ EWR+AV R LLTA VY+++
Sbjct: 23 GFYGLDLAWEYPNNDVEMNNFGKLLQEWRSAVEVESQRTGIRPLLLTAAVYYTSD----- 77
Query: 211 FAGVDYPSETVARSLDWVNVMA---FGLR----PPGXXXXXXXXXXXPLYDRA-SHYSAS 262
+ V YP + + RSLDWVN++A +GL PP LYD +
Sbjct: 78 YNSVSYPVQAINRSLDWVNLIAYEFYGLTTEIGPPAG-----------LYDPSIKGPCGD 126
Query: 263 YGVVSWLDAGVPASKVVMGIPLYGRSWFLRNKANSGVGAPVVAAGPKQRGSNATGAMSYA 322
G+ WL AG+P K V G P G SW L + + G V + A G+++Y
Sbjct: 127 TGLKHWLKAGLPEKKAVFGFPYVGWSWTLDDDKDHGDDVAVT----HRVAVTANGSINYD 182
Query: 323 E-VQWLAATATRGSRAVITAYDNASVASYVSVG 354
+ V+++ R T YD+ V Y G
Sbjct: 183 QIVKFITEYKAR------TVYDSEVVGFYCIAG 209
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.133 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,100,860
Number of extensions: 240022
Number of successful extensions: 442
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 416
Number of HSP's successfully gapped: 9
Length of query: 479
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 377
Effective length of database: 8,310,137
Effective search space: 3132921649
Effective search space used: 3132921649
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)