Os04g0376000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 60S ribosomal protein L35-1.
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Os04g0376000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 60S ribosomal protein L35-1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 78.44 | 0.416 | 13.5 | 0.387 | 1.32 | 0.617 | 0.739 | -0.948 | 0.0455 | 17.6 | 20.6 | 2721 | -- | -- |
| 80.11 | 0.417 | 13.5 | 0.616 | 1.27 | 0.753 | 0.593 | -- | 0.0872 | 17.3 | 20.5 | 1169 | -- | -- |
| 79.78 | 0.416 | 13.5 | 0.367 | 1.33 | 0.628 | -- | -0.989 | 0.0437 | 17.6 | 20.58 | 2720 | -- | -- |
| 81.1 | 0.419 | 13.5 | 0.666 | 1.3 | 0.748 | -- | -- | 0.126 | 17.4 | 20.6 | 1171 | -- | -- |
| 169.18 | 0.606 | 13.5 | 0.491 | -- | 0.674 | -- | -0.534 | 0.0701 | -- | 20.4 | 2040 | -- | -- |
| 92.57 | 0.451 | 13.4 | 0.981 | 1.29 | -- | 0.919 | -- | 0.292 | 17.6 | -- | -- | -- | -- |
| 94.64 | 0.456 | 13.4 | 0.977 | 1.3 | -- | -- | -- | 0.296 | 17.6 | -- | -- | -- | -- |
| 163.25 | 0.595 | 13.5 | 0.676 | -- | 0.771 | -- | -- | 0.104 | -- | 20.4 | 466 | -- | -- |
| 85.06 | 0.43 | 13.5 | -- | 1.35 | 0.943 | -- | -- | 0.000836 | 17.6 | 19 | 21455 | -- | -- |
| 182.15 | 0.631 | 13.4 | 0.935 | -- | -- | -- | -- | 0.265 | -- | -- | -- | -- | -- |
| 119.79 | 0.512 | 13.5 | -- | 1.28 | -- | -- | -- | 0.187 | 17.7 | -- | -- | -- | -- |
| 121.24 | 0.513 | 13.5 | -- | -- | 1.09 | -- | -- | -0.13 | -- | 26.27 | 328 | -- | -- |
| 205.21 | 0.669 | 13.4 | -- | -- | -- | -- | -- | 0.161 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 72.84 | temperature | 10 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 3 | 73.98 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 9 | 74.45 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 21 | 74.86 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 22 | 74.89 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 25 | 75.05 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 6 |
| 36 | 75.51 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 15 |
| 44 | 75.79 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 61 | 76.06 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 76 | 76.31 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 7 |
| 96 | 76.65 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 17 |
| 151 | 77.21 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 158 | 77.24 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 16 |
| 176 | 77.37 | temperature | 10 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 180 | 77.38 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 3 | 5 |
| 188 | 77.43 | temperature | 25 | 270 | > th | dose dependent | sin | 8 | NA |
| 228 | 77.65 | temperature | 25 | 90 | > th | dose dependent | sin | 5 | NA |
| 237 | 77.72 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 6 |
| 241 | 77.73 | temperature | 10 | 90 | > th | dose dependent | sin | 3 | NA |
| 273 | 77.88 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 292 | 77.96 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 324 | 78.10 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 6 |
| 327 | 78.10 | temperature | 30 | 90 | < th | dose dependent | sin | 2 | NA |
| 338 | 78.15 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 9 |
| 365 | 78.23 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 9 |
| 473 | 78.47 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 22 |
| 539 | 78.64 | wind | 1 | 43200 | > th | dose independent | rect. | 24 | 2 |
| 544 | 78.67 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 566 | 78.71 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 569 | 78.72 | wind | 1 | 43200 | < th | dose independent | rect. | 24 | 2 |
| 575 | 78.75 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |
| 578 | 78.76 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 579 | 78.76 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 632 | 78.88 | temperature | 20 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 659 | 78.93 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 9 |
| 680 | 78.97 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 3 | 2 |
| 688 | 78.99 | temperature | 25 | 270 | > th | dose independent | rect. | 9 | 1 |
| 740 | 79.07 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 3 |
| 743 | 79.07 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 747 | 79.08 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 5 |
| 810 | 79.18 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 975 | 79.42 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 5 |