BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0376000 Os04g0376000|AK064842
         (123 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G39390.1  | chr2:16450803-16451762 REVERSE LENGTH=124          202   2e-53
AT3G09500.1  | chr3:2917047-2917895 FORWARD LENGTH=124            201   6e-53
AT3G55170.1  | chr3:20453136-20454293 REVERSE LENGTH=124          197   1e-51
AT5G02610.2  | chr5:587611-588547 FORWARD LENGTH=147              189   2e-49

>AT2G39390.1 | chr2:16450803-16451762 REVERSE LENGTH=124
          Length = 123

 Score =  202 bits (515), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 104/122 (85%), Positives = 113/122 (92%)

Query: 1   MARIKVHELRGKNKAELQAQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRTSIARVLTV 60
           MARIKVHELR K+KA+L  QLK+ KAEL+LLRVAKVTGGAPNKLSKIKVVR SIA+VLTV
Sbjct: 1   MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKSLLPLDLRPKKTRAIRRRLTKHQLSLKTEREKKREKYFPMRKYA 120
           ISQKQK+ALREAYK K LLPLDLRPKKTRAIRRRLTKHQ SLKTEREKK+E YFP+RKYA
Sbjct: 61  ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 121 VK 122
           +K
Sbjct: 121 IK 122



>AT3G09500.1 | chr3:2917047-2917895 FORWARD LENGTH=124
          Length = 123

 Score =  201 bits (512), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 104/122 (85%), Positives = 114/122 (93%)

Query: 1   MARIKVHELRGKNKAELQAQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRTSIARVLTV 60
           MARIKVHELR K+K++LQ QLK+LKAEL+LLRVAKVTGGAPNKLSKIKVVR SIA+VLTV
Sbjct: 1   MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKSLLPLDLRPKKTRAIRRRLTKHQLSLKTEREKKREKYFPMRKYA 120
            SQKQK+ALREAYK K LLPLDLRPKKTRAIRRRLTKHQ SLKTEREKK+E YFP+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 121 VK 122
           +K
Sbjct: 121 IK 122



>AT3G55170.1 | chr3:20453136-20454293 REVERSE LENGTH=124
          Length = 123

 Score =  197 bits (500), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 101/122 (82%), Positives = 112/122 (91%)

Query: 1   MARIKVHELRGKNKAELQAQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRTSIARVLTV 60
           MARIKVHELR K+K++L  QLK+LKAEL+ LRVAKVTGGAPNKLSKIKVVR SIA+VLTV
Sbjct: 1   MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKSLLPLDLRPKKTRAIRRRLTKHQLSLKTEREKKREKYFPMRKYA 120
            SQKQK+ALREAYK K LLPLDLRPKKTRAIRRRLTKHQ SLKTEREKK++ YFP+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYA 120

Query: 121 VK 122
           +K
Sbjct: 121 IK 122



>AT5G02610.2 | chr5:587611-588547 FORWARD LENGTH=147
          Length = 146

 Score =  189 bits (481), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 104/145 (71%), Positives = 113/145 (77%), Gaps = 23/145 (15%)

Query: 1   MARIKVHELRGKNKAELQAQLKDLKAELSLLRVAKVTGGAPNKLSKI------------- 47
           MARIKVHELR K+K +LQ QLK+ KAEL+LLRVAKVTGGAPNKLSKI             
Sbjct: 1   MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIRMDVDLAYDSNMY 60

Query: 48  ----------KVVRTSIARVLTVISQKQKAALREAYKKKSLLPLDLRPKKTRAIRRRLTK 97
                     KVVR SIA+VLTVISQKQK+ALREAYK K LLPLDLRPKKTRAIRRRLTK
Sbjct: 61  LRSIKFGPCIKVVRKSIAQVLTVISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTK 120

Query: 98  HQLSLKTEREKKREKYFPMRKYAVK 122
           HQ SLKTEREKK+E YFP+RKYA+K
Sbjct: 121 HQASLKTEREKKKEMYFPVRKYAIK 145



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.130    0.335 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,126,174
Number of extensions: 67202
Number of successful extensions: 327
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 327
Number of HSP's successfully gapped: 4
Length of query: 123
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 37
Effective length of database: 8,748,793
Effective search space: 323705341
Effective search space used: 323705341
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 105 (45.1 bits)