Os04g0371000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Four-helical cytokine family protein.
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Os04g0371000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Four-helical cytokine family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 441.15 | 0.987 | 7.06 | 6.36 | 1.61 | 0.527 | -0.738 | -8.27 | 0.863 | 1.39 | 0.6872 | 6395 | 23.1 | -- |
| 510.85 | 1.05 | 6.93 | 6.18 | 1.59 | 0.581 | -0.212 | -- | 0.89 | 1.37 | 16.33 | 47520 | 23.8 | -- |
| 443.28 | 0.981 | 7.06 | 6.36 | 1.61 | 0.556 | -- | -8.16 | 0.864 | 1.3 | 0.6986 | 6368 | 23 | -- |
| 511.01 | 1.05 | 6.93 | 6.19 | 1.59 | 0.577 | -- | -- | 0.888 | 1.35 | 24.51 | 47520 | 23.8 | -- |
| 597.2 | 1.14 | 7.07 | 6.26 | -- | 0.312 | -- | -7.33 | 0.808 | -- | 0.5748 | 7489 | 22.1 | -- |
| 514.22 | 1.06 | 6.9 | 6.63 | 1.6 | -- | -0.176 | -- | 1.04 | 1.38 | -- | -- | -- | -- |
| 514.34 | 1.06 | 6.9 | 6.63 | 1.6 | -- | -- | -- | 1.04 | 1.36 | -- | -- | -- | -- |
| 535.76 | 1.08 | 6.89 | 6.42 | -- | -2.15 | -- | -- | 1.11 | -- | 25.41 | 3640 | 22.8 | -- |
| 895.66 | 1.39 | 7.27 | -- | 1.55 | 5.37 | -- | -- | -0.612 | 1.29 | 60.46 | 47520 | 20.8 | -- |
| 672.09 | 1.21 | 6.88 | 6.69 | -- | -- | -- | -- | 1.08 | -- | -- | -- | -- | -- |
| 1673.4 | 1.91 | 7.06 | -- | 1.72 | -- | -- | -- | 0.304 | 1.49 | -- | -- | -- | -- |
| 1042.9 | 1.5 | 7.26 | -- | -- | 5.49 | -- | -- | -0.616 | -- | 17.8 | 47520 | 21.1 | -- |
| 1854.22 | 2.01 | 7.04 | -- | -- | -- | -- | -- | 0.333 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 421.58 | wind | 1 | 14400 | < th | dose dependent | rect. | 1 | 3 |
| 4 | 428.05 | wind | 1 | 14400 | < th | dose independent | rect. | 24 | 4 |
| 6 | 430.59 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 3 |
| 22 | 436.35 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 6 |
| 36 | 437.61 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 7 |
| 50 | 438.62 | humidity | 70 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 68 | 439.50 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 7 |
| 91 | 440.78 | wind | 1 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 102 | 441.67 | wind | 1 | 14400 | < th | dose dependent | sin | 9 | NA |
| 106 | 441.73 | wind | 1 | 14400 | < th | dose independent | sin | 9 | NA |
| 122 | 442.20 | humidity | 80 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 128 | 442.52 | radiation | 20 | 43200 | > th | dose independent | rect. | 15 | 2 |
| 158 | 443.09 | wind | 1 | 14400 | > th | dose independent | sin | 9 | NA |
| 167 | 443.27 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 170 | 443.35 | humidity | 80 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 179 | 443.55 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 13 |
| 181 | 443.62 | wind | 1 | 14400 | < th | dose dependent | rect. | 18 | 13 |
| 202 | 444.03 | wind | 1 | 14400 | < th | dose dependent | rect. | 24 | 16 |
| 215 | 444.25 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 19 |
| 230 | 444.31 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 232 | 444.39 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 3 |
| 310 | 445.21 | wind | 7 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 340 | 445.54 | radiation | 20 | 43200 | > th | dose independent | sin | 14 | NA |
| 383 | 446.02 | humidity | 80 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 390 | 446.15 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 13 |
| 399 | 446.28 | humidity | 80 | 43200 | > th | dose independent | rect. | 17 | 5 |
| 400 | 446.31 | wind | 7 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 405 | 446.37 | humidity | 80 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 413 | 446.42 | wind | 1 | 14400 | < th | dose independent | rect. | 24 | 15 |
| 416 | 446.49 | humidity | 80 | 43200 | < th | dose independent | rect. | 16 | 6 |
| 470 | 447.26 | humidity | 70 | 43200 | > th | dose dependent | rect. | 5 | 5 |
| 474 | 447.27 | radiation | 10 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 497 | 447.73 | wind | 1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 508 | 447.83 | wind | 1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 538 | 448.14 | wind | 1 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 606 | 448.54 | radiation | 30 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 610 | 448.58 | humidity | 70 | 43200 | > th | dose dependent | rect. | 6 | 2 |
| 630 | 448.77 | humidity | 50 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 644 | 448.88 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 12 |
| 680 | 449.04 | radiation | 10 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 712 | 449.30 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 783 | 449.88 | wind | 1 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 802 | 450.05 | humidity | 60 | 43200 | > th | dose independent | rect. | 24 | 10 |
| 855 | 450.45 | wind | 1 | 43200 | < th | dose independent | rect. | 17 | 10 |
| 947 | 450.92 | humidity | 60 | 43200 | < th | dose independent | rect. | 23 | 11 |
| 981 | 451.17 | wind | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 983 | 451.18 | wind | 1 | 43200 | > th | dose independent | rect. | 17 | 10 |
| 992 | 451.20 | wind | 1 | 14400 | < th | dose dependent | rect. | 8 | 23 |