BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0371000 Os04g0371000|Os04g0371000
(152 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G21270.1 | chr1:7444997-7447345 FORWARD LENGTH=733 68 2e-12
AT1G21230.1 | chr1:7429980-7432346 FORWARD LENGTH=734 55 1e-08
AT1G21250.1 | chr1:7439512-7441892 FORWARD LENGTH=736 54 3e-08
AT1G16150.1 | chr1:5532415-5534877 FORWARD LENGTH=780 49 1e-06
AT1G21240.1 | chr1:7434303-7436702 FORWARD LENGTH=742 47 4e-06
>AT1G21270.1 | chr1:7444997-7447345 FORWARD LENGTH=733
Length = 732
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 71/134 (52%), Gaps = 13/134 (9%)
Query: 4 SFEVDCNDTGNGVSKPFVGNIEVVSLG-NGQARVMNHVSSSCYNRTSRQMNPADVWYLNL 62
SF + CN+ K F GN+ V+++ +GQ RV S CY+ +Q D
Sbjct: 55 SFNLTCNEQ----EKLFFGNMPVINMSLSGQLRVRLVRSRVCYDSQGKQ---TDYIAQRT 107
Query: 63 TGTPYRLSDSANKFTVIGCRTLAYTFDDYNVGKYMSGCVSVCRRGDLSSAINGSCVGIGC 122
T + LS+ N+FTV+GC + A+ V KY +GC+S+C D ++ NGSC G GC
Sbjct: 108 TLGNFTLSE-LNRFTVVGCNSYAF-LRTSGVEKYSTGCISIC---DSATTKNGSCSGEGC 162
Query: 123 CQTNITTGLSYYQV 136
CQ + G S+ +V
Sbjct: 163 CQIPVPRGYSFVRV 176
>AT1G21230.1 | chr1:7429980-7432346 FORWARD LENGTH=734
Length = 733
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 69/136 (50%), Gaps = 18/136 (13%)
Query: 4 SFEVDCNDTGNGVSKPFVGNIEVVSLGN-GQARVMNHVSSSCYNRTSRQMNPADVWYL-- 60
SF + C + V + NIEV++ + GQ R + S+ CY++ + + +W+
Sbjct: 55 SFNITCEEDKPNV----LSNIEVLNFNHSGQLRGLIPRSTVCYDQQTNN-DFESLWFRLD 109
Query: 61 NLTGTPYRLSDSANKFTVIGCRTLAYTFDDYNVGKYMSGCVSVCRRGDLSSAINGSCVGI 120
NL+ +P NKFT++GC A + + Y +GC+S+C D N C G+
Sbjct: 110 NLSFSP------NNKFTLVGCNAWAL-LSTFGIQNYSTGCMSLC---DTPPPPNSKCNGV 159
Query: 121 GCCQTNITTGLSYYQV 136
GCC+T ++ L +++
Sbjct: 160 GCCRTEVSIPLDSHRI 175
>AT1G21250.1 | chr1:7439512-7441892 FORWARD LENGTH=736
Length = 735
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 18/134 (13%)
Query: 4 SFEVDCNDTGNGVSKPFV-GNIEVVSLGN-GQARVMNHVSSSCYNRTSRQMNPADVWYLN 61
SF + C + +P V +IEV + + GQ +V+ + SS+CY+ ++ + L
Sbjct: 58 SFSITCKE-----DRPHVLSDIEVANFNHSGQLQVLLNRSSTCYDEQGKKTEEDSSFTLE 112
Query: 62 LTGTPYRLSDSAN-KFTVIGCRTLAYTFDDYNVGKYMSGCVSVCRRGDLSSAINGSCVGI 120
LS SAN K T +GC L+ D + + Y + C+S+C D +G C G
Sbjct: 113 ------NLSLSANNKLTAVGCNALSL-LDTFGMQNYSTACLSLC---DSPPEADGECNGR 162
Query: 121 GCCQTNITTGLSYY 134
GCC+ +++ L Y
Sbjct: 163 GCCRVDVSAPLDSY 176
>AT1G16150.1 | chr1:5532415-5534877 FORWARD LENGTH=780
Length = 779
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 1 MAPSFEVDCNDTGNGVSKPFVGNI--EVVSL---------GNGQARVMNHVSSS-CYNRT 48
+ P +EV CN T S PF+ I E+V++ NG + V+SS C T
Sbjct: 55 LNPWYEVVCNTT---TSVPFLSRINRELVNIYLPDPTEYYSNGVVHIKGPVTSSGCSTGT 111
Query: 49 SRQMNPADVWYLNLTG--TPYRLSDSANKFTVIGCRTLAYTFDDYNVGKYMSGCVSVCRR 106
S+ + P LN+ G +PY L+D N +GC A D V + GC S C
Sbjct: 112 SQPLTPQP---LNVAGQGSPYFLTDK-NLLMAVGCNVKAVMMD---VKSQIIGCESSCDE 164
Query: 107 GDLSSAI--NGSCVGIGCCQTNITTG 130
+ SS + N C G CCQT I G
Sbjct: 165 RNSSSQVVRNKICSGNKCCQTRIPEG 190
>AT1G21240.1 | chr1:7434303-7436702 FORWARD LENGTH=742
Length = 741
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 20 FVGNIEVVSLGN-GQARVMNHVSSSCYNRTSRQMNPADVWYLNLTGTPYRLSDSANKFTV 78
G I+V ++ + G V+ S CY + + A + L G+ + LS S NKFT+
Sbjct: 70 LFGIIQVTNISHSGHVSVLFERFSECYEQKNETNGTALGYQL---GSSFSLS-SNNKFTL 125
Query: 79 IGCRTLAY--TFDDYNVGKYMSGCVSVCRRGDLSSAINGSCVGIGCCQTN 126
+GC L+ TF N Y +GC+S+C NG C G+GCC T
Sbjct: 126 VGCNALSLLSTFGKQN---YSTGCLSLCNS---QPEANGRCNGVGCCTTE 169
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.136 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,546,100
Number of extensions: 137651
Number of successful extensions: 265
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 264
Number of HSP's successfully gapped: 8
Length of query: 152
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 62
Effective length of database: 8,639,129
Effective search space: 535625998
Effective search space used: 535625998
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 107 (45.8 bits)