Os04g0363700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Single-strand binding protein/Primosomal replication protein n family protein.
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Os04g0363700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Single-strand binding protein/Primosomal replication protein n family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 114.27 | 0.502 | 7.83 | -0.139 | 3.95 | 1.75 | 0.0701 | -1.81 | 0.59 | 17.6 | 28.3 | 2 | 21.2 | -- |
| 117.18 | 0.504 | 7.85 | -0.287 | 3.94 | 1.99 | 0.883 | -- | 0.56 | 17.6 | 27.84 | 3 | 20.9 | -- |
| 114.28 | 0.498 | 7.83 | -0.135 | 3.95 | 1.74 | -- | -1.85 | 0.591 | 17.6 | 28.3 | 2 | 21.2 | -- |
| 119.07 | 0.508 | 7.84 | -0.296 | 3.93 | 1.96 | -- | -- | 0.56 | 17.6 | 27.8 | 3 | 20.9 | -- |
| 181.11 | 0.63 | 7.85 | -0.707 | -- | -3.67 | -- | -0.962 | 0.183 | -- | 65.54 | 6 | 0.36 | -- |
| 152.2 | 0.578 | 7.89 | -0.587 | 3.4 | -- | 0.732 | -- | 0.306 | 17.4 | -- | -- | -- | -- |
| 153.51 | 0.58 | 7.89 | -0.588 | 3.4 | -- | -- | -- | 0.31 | 17.4 | -- | -- | -- | -- |
| 158.14 | 0.586 | 7.88 | -0.584 | -- | -3.58 | -- | -- | 0.175 | -- | 205.5 | 407 | 4.01 | -- |
| 121.24 | 0.513 | 7.84 | -- | 3.96 | 2.07 | -- | -- | 0.605 | 17.6 | 27.78 | 3 | 21 | -- |
| 757.22 | 1.29 | 7.84 | -0.703 | -- | -- | -- | -- | 0.226 | -- | -- | -- | -- | -- |
| 162.63 | 0.597 | 7.87 | -- | 3.41 | -- | -- | -- | 0.375 | 17.4 | -- | -- | -- | -- |
| 164.41 | 0.597 | 7.81 | -- | -- | -3.4 | -- | -- | 0.333 | -- | 440.7 | 467 | 4.55 | -- |
| 770.27 | 1.3 | 7.82 | -- | -- | -- | -- | -- | 0.304 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 105.54 | temperature | 15 | 270 | > th | dose dependent | rect. | 2 | 9 |
| 5 | 108.44 | temperature | 25 | 10 | < th | dose dependent | rect. | 6 | 6 |
| 6 | 108.46 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 9 |
| 7 | 108.50 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 8 |
| 9 | 108.72 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 9 |
| 109 | 115.50 | temperature | 30 | 10 | < th | dose dependent | sin | 4 | NA |
| 174 | 117.44 | temperature | 20 | 270 | < th | dose independent | rect. | 4 | 8 |
| 222 | 118.87 | temperature | 10 | 90 | > th | dose dependent | rect. | 13 | 14 |
| 234 | 119.29 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 24 | 9 |
| 235 | 119.31 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 14 |
| 242 | 119.46 | temperature | 15 | 720 | > th | dose independent | rect. | 23 | 14 |
| 270 | 119.89 | temperature | 25 | 10 | > th | dose independent | rect. | 5 | 8 |
| 308 | 120.65 | temperature | 15 | 720 | > th | dose independent | rect. | 17 | 18 |
| 311 | 120.71 | temperature | 15 | 720 | > th | dose independent | rect. | 23 | 7 |
| 318 | 120.82 | temperature | 25 | 10 | > th | dose independent | rect. | 7 | 6 |
| 340 | 121.24 | temperature | 15 | 270 | > th | dose independent | rect. | 7 | 14 |
| 350 | 121.39 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 5 |
| 388 | 122.18 | temperature | 15 | 720 | > th | dose independent | rect. | 1 | 19 |
| 461 | 123.14 | temperature | 15 | 720 | > th | dose independent | rect. | 23 | 22 |
| 503 | 123.56 | temperature | 15 | 10 | > th | dose dependent | rect. | 13 | 15 |
| 554 | 124.07 | temperature | 10 | 10 | > th | dose dependent | sin | 4 | NA |
| 566 | 124.12 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 15 |
| 618 | 124.66 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 6 |
| 623 | 124.72 | humidity | 50 | 14400 | > th | dose independent | rect. | 23 | 10 |
| 635 | 124.81 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 15 | 4 |
| 650 | 124.90 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 16 |
| 658 | 125.01 | temperature | 15 | 720 | > th | dose independent | rect. | 8 | 21 |
| 717 | 125.41 | temperature | 15 | 720 | > th | dose independent | sin | 7 | NA |
| 731 | 125.50 | temperature | 15 | 720 | > th | dose independent | rect. | 16 | 14 |
| 752 | 125.60 | temperature | 20 | 270 | < th | dose independent | sin | 3 | NA |
| 872 | 126.32 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 3 |
| 888 | 126.42 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 18 | 18 |
| 922 | 126.66 | wind | 9 | 1440 | < th | dose independent | rect. | 23 | 11 |
| 923 | 126.66 | radiation | 10 | 270 | < th | dose independent | rect. | 21 | 11 |
| 935 | 126.71 | radiation | 20 | 270 | < th | dose dependent | rect. | 21 | 11 |
| 941 | 126.73 | temperature | 25 | 10 | < th | dose independent | sin | 3 | NA |
| 953 | 126.79 | radiation | 1 | 270 | < th | dose independent | rect. | 15 | 6 |
| 957 | 126.80 | temperature | 15 | 720 | < th | dose independent | rect. | 24 | 1 |
| 967 | 126.84 | temperature | 15 | 720 | < th | dose independent | rect. | 23 | 4 |