BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0363700 Os04g0363700|AK070144
         (111 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G11060.1  | chr4:6754820-6756230 REVERSE LENGTH=202            158   5e-40
AT3G18580.1  | chr3:6396940-6398068 REVERSE LENGTH=218             65   8e-12

>AT4G11060.1 | chr4:6754820-6756230 REVERSE LENGTH=202
          Length = 201

 Score =  158 bits (400), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 75/111 (67%), Positives = 85/111 (76%)

Query: 1   AIICGKVGQVPVQKILRNXXXXXXXXXXXXXMFDQRTVGAENLPMPAQWHRISVHNEQLG 60
           AIICGKVGQ P+QKILRN             MFDQR VGA N P PAQWHRI+VHNE LG
Sbjct: 74  AIICGKVGQAPLQKILRNGRTVTIFTVGTGGMFDQRLVGATNQPKPAQWHRIAVHNEVLG 133

Query: 61  AFAVQKLVKNSAVYVEGDIETRVYNDRINDQVKNIPEICVRRDGMYANLKF 111
           ++AVQKL KNS+VYVEGDIETRVYND I+ +VK+IPEICVRRDG    +K+
Sbjct: 134 SYAVQKLAKNSSVYVEGDIETRVYNDSISSEVKSIPEICVRRDGKIRMIKY 184



>AT3G18580.1 | chr3:6396940-6398068 REVERSE LENGTH=218
          Length = 217

 Score = 65.1 bits (157), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 22/118 (18%)

Query: 1   AIICGKVGQVPVQKILRNXXXXXXXXXXXXXMFDQRTVGAENLPMP-------------- 46
           AI+ G+VGQ+P+QK L++             +F   T G  N   P              
Sbjct: 83  AILVGQVGQLPLQKKLKSGRTVT--------LFSVGTGGIRNNRRPLINEDPREYASRSA 134

Query: 47  AQWHRISVHNEQLGAFAVQKLVKNSAVYVEGDIETRVYNDRINDQVKNIPEICVRRDG 104
            QWHR+SV+ E+L    ++ +   + +Y+EG++ET+++ D +   V+ I E+ +RR+G
Sbjct: 135 VQWHRVSVYPERLADLVLKNVEPGTVIYLEGNLETKIFTDPVTGLVRRIREVAIRRNG 192



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.138    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,023,912
Number of extensions: 63670
Number of successful extensions: 108
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 2
Length of query: 111
Length of database: 11,106,569
Length adjustment: 80
Effective length of query: 31
Effective length of database: 8,913,289
Effective search space: 276311959
Effective search space used: 276311959
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)