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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0357300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Helicase-like protein [Oryza sativa (japonica cultivar-group)].


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.78 (0.0142) R2 : 0.435
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.02 (0.268) R2dE : 0.434 R2E : 0.434
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0168 (0.0299) R2dN8 : 0.000509 R2N8 : 0.00105
σ : 0.266
deviance : 32.71
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_____
C
peak time of C : --
E
wheather : wind
threshold : 0.1197
memory length : 26
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 22
open length of G : 0.933

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
32.46 0.265 2.77 0.0134 0.0512 1.2 -0.0829 -18.6 -0.0113 8.52 1 10 22 1
32.48 0.265 2.77 0.054 0.0521 5.04 -0.0952 -- -0.00463 8.9 0.001447 23 22 0.851
32.48 0.267 2.77 0.0109 0.052 1.22 -- -18.4 -0.0114 8.18 1 10 22 1
32.48 0.265 2.78 0.055 0.0526 5.05 -- -- -0.0112 8.17 0.1216 23 22 0.818
32.63 0.267 2.77 0.00945 -- 1.04 -- -19.2 -0.0109 -- 1 10 22 1
57.77 0.356 2.78 0.00901 0.018 -- 0.0874 -- -0.0298 6.15 -- -- -- --
57.78 0.356 2.79 0.00962 0.0207 -- -- -- -0.0303 4.37 -- -- -- --
32.63 0.266 2.78 0.0548 -- 5.03 -- -- -0.0107 -- 0.1298 24 22 0.851
32.56 0.266 2.78 -- 0.0527 5.04 -- -- -0.0174 8.11 0.08451 25 22 0.846
57.8 0.355 2.79 0.0104 -- -- -- -- -0.0297 -- -- -- -- --
57.78 0.356 2.79 -- 0.0209 -- -- -- -0.0314 4.36 -- -- -- --
32.71 0.266 2.78 -- -- 5.02 -- -- -0.0168 -- 0.1197 26 22 0.933
57.81 0.355 2.79 -- -- -- -- -- -0.0309 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 32.46 wind 1 10 < th dose independent rect. 22 1
3 32.46 wind 1 10 < th dose dependent rect. 22 1
58 50.46 temperature 20 90 < th dose dependent rect. 6 5
66 50.55 temperature 20 30 < th dose independent rect. 6 2
75 50.62 temperature 20 30 < th dose independent rect. 6 6
96 50.72 temperature 20 30 < th dose dependent rect. 7 1
166 51.14 temperature 20 30 > th dose dependent rect. 21 1
204 51.43 wind 5 10 > th dose independent rect. 8 1
206 51.43 wind 5 10 > th dose dependent rect. 8 1
217 51.51 radiation 1 270 > th dose independent rect. 18 1
227 51.52 atmosphere 1005 10 < th dose independent rect. 22 1
263 52.53 wind 3 90 < th dose independent rect. 15 7
271 52.81 humidity 50 90 < th dose independent rect. 13 1
272 52.81 humidity 50 90 < th dose dependent rect. 13 1
274 52.82 humidity 50 10 < th dose independent rect. 13 1
285 52.82 humidity 50 10 < th dose dependent rect. 13 1
357 52.86 humidity 50 10 < th dose dependent rect. 13 5
415 52.92 humidity 50 10 < th dose independent rect. 13 5
531 53.01 humidity 80 90 < th dose dependent rect. 6 1
634 53.26 wind 3 90 > th dose dependent rect. 6 1
686 53.43 humidity 80 90 < th dose independent rect. 6 1
694 53.57 humidity 50 90 < th dose dependent sin 7 NA
708 53.67 humidity 50 10 < th dose independent sin 13 NA
713 53.74 humidity 50 10 < th dose dependent sin 12 NA
717 53.81 humidity 50 10 > th dose independent sin 13 NA
741 54.09 humidity 80 30 > th dose independent rect. 21 1
743 54.12 temperature 20 90 < th dose independent sin 0 NA
757 54.16 temperature 20 90 > th dose independent sin 0 NA
759 54.16 humidity 80 270 < th dose dependent rect. 4 3
763 54.18 humidity 80 270 < th dose independent rect. 4 3
770 54.24 wind 3 90 > th dose independent rect. 6 1
807 54.45 wind 5 10 > th dose independent rect. 1 8
808 54.46 wind 5 10 > th dose independent rect. 3 6
820 54.50 temperature 20 10 > th dose independent rect. 21 1
923 54.76 radiation 40 90 > th dose independent rect. 12 3
969 54.86 humidity 50 90 < th dose independent sin 7 NA
972 54.87 atmosphere 1010 10 < th dose dependent rect. 21 1
979 54.88 wind 5 10 > th dose dependent rect. 2 7