BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0357300 Os04g0357300|AK102855
         (441 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G28780.1  | chr5:10812907-10814173 REVERSE LENGTH=338           86   3e-17
AT3G51700.1  | chr3:19179443-19181145 REVERSE LENGTH=345           77   2e-14
AT3G51690.1  | chr3:19176731-19178107 REVERSE LENGTH=332           74   2e-13

>AT5G28780.1 | chr5:10812907-10814173 REVERSE LENGTH=338
          Length = 337

 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 90/201 (44%), Gaps = 20/201 (9%)

Query: 247 WGCMRHLQLVRNMRAQNDPWFVEYLLRIGNGTEEINDNGDIHLPDNICVPYTGDDSDLDK 306
           W   RH     N+   N P            T E +D   + +  +  + + G+   L +
Sbjct: 51  WNTSRHCTCCYNVGNGNAP------------TCETDDGEVVEMDTSFFLKHNGNR--LQQ 96

Query: 307 LMESVYPTLNDCLADPNYITSRAILSTRNDCVDNINLKMIDRFQGEEMVYHS------FD 360
           + +  Y   +    +  Y+T R IL+  N+ VD IN  M+ +  G+   Y S       D
Sbjct: 97  VTKGAYVQFSVSQPNFQYLTERGILTPHNEYVDEINAYMLSQVGGDSKEYLSSYSIGKAD 156

Query: 361 SAEDDPHNYYPPKFLNTLTPYGLPPHMLKLKINCPIILLRNIDPANGLCNGTRLVVRGFQ 420
           +   D    Y  K+LN+L    LP H + LK   PI+ +RN +   GLCNGTRL+V    
Sbjct: 157 TIGADYEALYHVKYLNSLEFPSLPKHKISLKKGVPIMQMRNFNQKEGLCNGTRLIVTNLG 216

Query: 421 KNAIDVEIVLGQHSRTRVLLP 441
           +  I+ +IV G H+   V +P
Sbjct: 217 EQVIEAQIVTGTHAGKMVSIP 237



>AT3G51700.1 | chr3:19179443-19181145 REVERSE LENGTH=345
          Length = 344

 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 91/187 (48%), Gaps = 13/187 (6%)

Query: 264 DPWFVEYLLRIGNGTEEINDNGD----IHLPDNICVPYTGDDSDLDKLMESVYPTLNDCL 319
           D  F +++  IG   E IN   D    I + +++ +    D   +  +++ VY       
Sbjct: 57  DEAFTKWITNIGG--ENINKPNDGETKIDIHEDLLITECKDP--IKTIVDEVYGESFTES 112

Query: 320 ADPNYITSRAILSTRNDCVDNINLKMIDRFQGEEMVYHSFDS-----AEDDPHNYYPPKF 374
            +P++   RAIL   ND  D IN  M+ + QGEE   +  D+     A  +    YP +F
Sbjct: 113 YNPDFYQERAILCHTNDVADEINDYMLSQLQGEETKCYGADTIYPTHASPNDKMLYPLEF 172

Query: 375 LNTLTPYGLPPHMLKLKINCPIILLRNIDPANGLCNGTRLVVRGFQKNAIDVEIVLGQHS 434
           LN++   G P   L+LK+  P++LLR++ P   L  GTRL +   +   ++  I+ G + 
Sbjct: 173 LNSIKIPGFPDFKLRLKVGAPVMLLRDLAPYGWLRKGTRLQITRVETFVLEAMIITGNNH 232

Query: 435 RTRVLLP 441
             +VL+P
Sbjct: 233 GEKVLIP 239



>AT3G51690.1 | chr3:19176731-19178107 REVERSE LENGTH=332
          Length = 331

 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 71/137 (51%), Gaps = 2/137 (1%)

Query: 307 LMESVYPTLNDCLADPNYITSRAILSTRNDCVDNINLKMIDRFQGEEMVYHSFDSAEDDP 366
           L++ VY        +P++    AIL  R+D VD IN  M+    GEE    S DS    P
Sbjct: 99  LLKEVYGEYFAKSYNPDFCHDSAILCHRDDDVDQINDYMLSLLPGEEKECLSTDSISPSP 158

Query: 367 HN--YYPPKFLNTLTPYGLPPHMLKLKINCPIILLRNIDPANGLCNGTRLVVRGFQKNAI 424
           ++  + P + LN++   GLP   L+LK+  P++LLR++DP+ G   GTRL +       +
Sbjct: 159 NDDMFVPLEVLNSIKVPGLPDFKLRLKVGAPVMLLRDLDPSRGFFTGTRLQITRLCGFLL 218

Query: 425 DVEIVLGQHSRTRVLLP 441
           +  I+ G     ++ +P
Sbjct: 219 EAMIIAGNKHGKKIWIP 235



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,990,371
Number of extensions: 434826
Number of successful extensions: 1212
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1210
Number of HSP's successfully gapped: 3
Length of query: 441
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 339
Effective length of database: 8,310,137
Effective search space: 2817136443
Effective search space used: 2817136443
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)