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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0347800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.67 (0.0392) R2 : 0.361
β1 : -1.33 (0.143) R2dD : 0.125 R2D : 0.107
β2 : 1.32 (0.101) R2dC : 0.244 R2C : 0.235
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.243 (0.0835) R2dN8 : 0.0159 R2N8 : -0.00605
σ : 0.736
deviance : 246.76
__
_____
C
peak time of C : 7.51
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
223.61 0.703 3.64 -1.22 1.3 -0.0742 -2.61 3.29 -0.228 7.39 1.205 94 -- --
228.77 0.704 3.67 -1.35 1.28 0.434 -2.51 -- -0.232 7.31 1.3 174 -- --
241.17 0.723 3.63 -1.26 1.31 -0.0763 -- 3.03 -0.224 7.63 1.121 88 -- --
243.82 0.727 3.67 -1.4 1.21 0.506 -- -- -0.207 7.73 1.4 177 -- --
305.18 0.814 3.73 -1.68 -- 0.959 -- -0.207 -0.282 -- 3.971 92 -- --
231.66 0.714 3.67 -1.28 1.33 -- -2.35 -- -0.248 7.42 -- -- -- --
246.76 0.736 3.67 -1.33 1.32 -- -- -- -0.243 7.51 -- -- -- --
281.98 0.782 3.69 -1.73 -- 1.49 -- -- -0.152 -- 4.804 470 -- --
289.1 0.792 3.61 -- 1.48 -0.438 -- -- -0.138 7.59 1.8 761 -- --
340.38 0.862 3.7 -1.31 -- -- -- -- -0.222 -- -- -- -- --
293.2 0.801 3.64 -- 1.31 -- -- -- -0.095 7.58 -- -- -- --
353.56 0.876 3.66 -- -- 1.05 -- -- 0.0205 -- 4.504 468 -- --
385.48 0.916 3.67 -- -- -- -- -- -0.0771 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 213.14 wind 1.0 10 < th dose dependent rect. 5 21
2 213.84 humidity 90.0 1440 < th dose independent rect. 10 2
4 215.92 precipitation 0.1 1440 > th dose independent rect. 9 1
5 215.92 precipitation 0.1 1440 > th dose dependent rect. 9 1
6 216.10 humidity 90.0 1440 > th dose dependent rect. 10 2
7 216.30 precipitation 0.1 1440 < th dose independent rect. 2 1
9 216.30 precipitation 0.1 1440 < th dose dependent rect. 2 1
10 216.35 precipitation 0.1 1440 > th dose independent rect. 9 4
11 216.35 precipitation 0.1 1440 > th dose dependent rect. 9 4
12 216.42 precipitation 0.1 1440 > th dose independent rect. 2 1
13 216.42 precipitation 0.1 1440 > th dose dependent rect. 2 1
14 216.45 humidity 90.0 1440 > th dose independent rect. 10 2
15 216.51 precipitation 0.1 1440 > th dose independent rect. 6 1
16 216.51 precipitation 0.1 1440 > th dose dependent rect. 6 1
23 217.04 wind 1.0 10 < th dose dependent rect. 21 5
35 217.30 wind 1.0 90 < th dose dependent rect. 10 14
40 217.81 temperature 25.0 270 < th dose independent rect. 15 17
42 217.83 wind 1.0 1440 > th dose independent rect. 11 1
48 218.12 temperature 25.0 270 > th dose independent sin 9 NA
62 218.45 radiation 40.0 1440 < th dose dependent rect. 23 6
64 218.55 temperature 15.0 14400 < th dose independent rect. 24 1
68 218.59 wind 1.0 10 < th dose dependent rect. 11 15
70 218.64 temperature 15.0 14400 < th dose independent rect. 21 4
73 218.71 wind 1.0 14400 < th dose dependent rect. 4 2
95 218.98 temperature 15.0 14400 < th dose independent rect. 6 20
100 219.04 temperature 15.0 14400 < th dose independent rect. 9 17
104 219.05 temperature 15.0 14400 < th dose independent rect. 5 10
113 219.10 wind 1.0 10 < th dose independent rect. 5 21
119 219.16 precipitation 0.1 1440 < th dose independent rect. 8 2
121 219.16 precipitation 0.1 1440 < th dose dependent rect. 8 2
136 219.29 temperature 15.0 14400 < th dose independent rect. 6 5
138 219.31 temperature 15.0 14400 > th dose independent rect. 10 16
141 219.34 temperature 15.0 14400 > th dose independent rect. 21 3
143 219.36 temperature 15.0 14400 > th dose independent rect. 6 9
153 219.42 temperature 15.0 14400 < th dose independent rect. 5 7
187 219.63 wind 1.0 10 < th dose independent rect. 23 1
191 219.63 wind 1.0 10 < th dose dependent rect. 23 1
207 219.69 temperature 25.0 270 > th dose independent rect. 18 19
208 219.70 temperature 15.0 14400 < th dose independent sin 0 NA
224 219.74 temperature 25.0 720 > th dose independent rect. 22 2
227 219.75 wind 1.0 4320 < th dose dependent rect. 2 4
229 219.77 temperature 25.0 270 > th dose dependent rect. 22 9
240 219.85 temperature 15.0 14400 < th dose independent rect. 6 1
241 219.85 temperature 25.0 270 > th dose independent rect. 20 12
249 219.86 wind 1.0 10 < th dose independent rect. 11 14
251 219.87 wind 1.0 90 < th dose independent rect. 8 16
254 219.89 temperature 25.0 270 < th dose independent sin 10 NA
258 219.90 temperature 25.0 270 < th dose independent rect. 24 9
276 219.96 temperature 15.0 14400 < th dose independent sin 18 NA
316 220.06 wind 1.0 1440 < th dose independent rect. 11 1
322 220.09 wind 1.0 90 < th dose independent rect. 22 1
324 220.11 temperature 15.0 14400 > th dose independent sin 22 NA
327 220.12 wind 1.0 90 < th dose independent rect. 11 12
336 220.17 temperature 15.0 14400 > th dose independent sin 19 NA
337 220.17 temperature 25.0 270 > th dose independent rect. 19 15
353 220.25 temperature 15.0 14400 > th dose independent rect. 18 7
355 220.26 precipitation 0.1 1440 < th dose independent rect. 6 1
361 220.26 precipitation 0.1 1440 < th dose dependent rect. 6 1
370 220.29 wind 1.0 90 < th dose dependent rect. 22 1
407 220.37 wind 1.0 1440 < th dose dependent rect. 11 1
410 220.38 humidity 90.0 270 > th dose independent rect. 4 2
414 220.38 temperature 15.0 14400 < th dose dependent rect. 5 4
418 220.39 temperature 25.0 720 > th dose dependent rect. 22 1
440 220.44 radiation 10.0 1440 < th dose independent rect. 1 4
459 220.46 atmosphere 1005.0 43200 > th dose independent rect. 23 1
475 220.49 wind 1.0 90 < th dose independent rect. 10 14
504 220.56 temperature 15.0 14400 < th dose independent rect. 24 23
509 220.57 temperature 15.0 14400 < th dose independent rect. 21 23
536 220.61 temperature 15.0 14400 < th dose dependent rect. 4 12
551 220.63 temperature 15.0 14400 < th dose dependent rect. 3 18
555 220.64 temperature 15.0 14400 < th dose independent rect. 10 23
569 220.66 temperature 15.0 14400 < th dose independent rect. 17 22
580 220.69 temperature 15.0 14400 > th dose independent rect. 7 4
587 220.70 temperature 15.0 14400 < th dose independent no NA NA
612 220.74 temperature 15.0 14400 < th dose independent rect. 21 18
625 220.76 temperature 15.0 14400 > th dose independent rect. 24 1
667 220.85 humidity 90.0 1440 < th dose independent rect. 9 5
683 220.90 temperature 15.0 14400 < th dose dependent sin 1 NA
713 220.94 wind 1.0 90 < th dose dependent sin 19 NA
733 220.99 wind 1.0 14400 < th dose independent rect. 4 2
773 221.10 atmosphere 995.0 14400 > th dose dependent rect. 8 1
774 221.10 atmosphere 1015.0 14400 < th dose dependent rect. 8 1
807 221.18 radiation 10.0 1440 < th dose independent rect. 23 6
812 221.19 wind 1.0 4320 < th dose independent rect. 1 5
824 221.21 temperature 15.0 14400 < th dose independent rect. 24 20
836 221.24 wind 1.0 14400 > th dose independent rect. 4 2
853 221.29 atmosphere 1005.0 43200 > th dose independent rect. 22 6
864 221.31 humidity 50.0 43200 < th dose dependent rect. 18 1
873 221.32 humidity 50.0 43200 < th dose dependent rect. 8 2
876 221.34 atmosphere 1005.0 43200 > th dose independent rect. 22 9
902 221.38 humidity 50.0 43200 < th dose dependent rect. 18 16
909 221.39 humidity 50.0 43200 < th dose dependent rect. 3 7
929 221.42 atmosphere 1005.0 43200 < th dose independent rect. 23 2
946 221.44 humidity 90.0 90 > th dose dependent rect. 5 19
965 221.47 humidity 90.0 1440 < th dose independent rect. 8 3
1000 221.51 temperature 10.0 1440 > th dose independent rect. 5 5