BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0347800 Os04g0347800|AK108606
         (426 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G14180.1  | chr4:8178330-8183515 FORWARD LENGTH=1269           276   2e-74

>AT4G14180.1 | chr4:8178330-8183515 FORWARD LENGTH=1269
          Length = 1268

 Score =  276 bits (706), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 146/355 (41%), Positives = 210/355 (59%), Gaps = 2/355 (0%)

Query: 4    LLIFNILHSASAMTFTCDDDAWLALTMKLLDCFNSSLAYTSSEQEWKILIGILCLILNHS 63
            LL+FNIL S        D+ +W A+++KLL+  +          E  ++IGIL L+L HS
Sbjct: 830  LLVFNILTSVQPAVLMIDE-SWYAVSIKLLNFLSLRDTAIKQNHEDMVVIGILSLVLYHS 888

Query: 64   ANKVLIEPAKAIILNNCLALLMDGIVQEACAKGPSLFQHNQETTFGEXXXXXXXXXFFSV 123
            ++  L+E ++ I+ N+ L   ++ +V  AC+KGP+L Q   ET  GE         FFS+
Sbjct: 889  SDGALVEASRNIVSNSYLVSAINTVVDVACSKGPALTQCQDETNIGEALAFTLLLYFFSL 948

Query: 124  RSLQAILEASIDWQEFLQYSDDTESSSVLGIPCHDLCRLMHFGPSPVKLIASQCLLELLN 183
            RSLQ +L  ++DWQ F   S   E+  V+ I CH+LCRLMHFG   +KLIAS CLLELL 
Sbjct: 949  RSLQIVLAGAVDWQTFFGTSTSLETLPVVCIHCHNLCRLMHFGAPQIKLIASYCLLELLT 1008

Query: 184  RISDQRSCLNAELRCSAKYLKSMIAVTEGMVFDQDSRVAENCGACLTVILGWERFGSREK 243
             +S+Q      +L+CS+ YLKSM AV  G+VF  D RVA N   CL++ILGWE    R +
Sbjct: 1009 GLSEQVDIKKEQLQCSSSYLKSMKAVLGGLVFCDDIRVATNSALCLSMILGWEDMEGRTE 1068

Query: 244  AVIRESKWSRLILEEFAVALTAPGLTSKSFSNQQKIAANIALSLLQLSQVPDWLTSLFSD 303
             +++ S W R I EE +V+L  P   S ++ N  K A  + +++L+L   P WL ++F +
Sbjct: 1069 -MLKTSSWYRFIAEEMSVSLAMPCSASSTYVNHHKPAVYLTVAMLRLKNKPVWLRTVFDE 1127

Query: 304  SLISGIVANLSARNVTAEIVTLFSELMAKNYLNQEHIAGLHNLFQVCRRQAYEGG 358
            S IS ++ NL+  N++ EIV LF ELM    LN + +  L   FQ CR+Q +  G
Sbjct: 1128 SCISSMIQNLNGINISREIVILFRELMQAELLNSQQVTKLDRAFQECRKQMHRNG 1182



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.133    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,030,414
Number of extensions: 286783
Number of successful extensions: 676
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 675
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 325
Effective length of database: 8,337,553
Effective search space: 2709704725
Effective search space used: 2709704725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)