Os04g0341200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
FiT-DB / Search/ Help/ Sample detail
|
Os04g0341200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description :
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 338.18 | 0.864 | 4.3 | -2.05 | 0.171 | 0.984 | -0.584 | 0.214 | 0.707 | 22 | 28.9 | 4238 | -- | -- |
| 338.2 | 0.857 | 4.29 | -2.01 | 0.176 | 1.01 | -0.591 | -- | 0.71 | 22 | 28.89 | 4238 | -- | -- |
| 339.49 | 0.858 | 4.3 | -2.05 | 0.174 | 0.983 | -- | 0.298 | 0.704 | 22.5 | 28.89 | 4237 | -- | -- |
| 339.52 | 0.858 | 4.29 | -1.98 | 0.174 | 1.02 | -- | -- | 0.718 | 22.5 | 28.85 | 4238 | -- | -- |
| 341.27 | 0.86 | 4.3 | -2.08 | -- | 0.946 | -- | 0.399 | 0.699 | -- | 28.85 | 4271 | -- | -- |
| 371.94 | 0.904 | 4.3 | -2.3 | 0.118 | -- | -0.67 | -- | 0.677 | 21.6 | -- | -- | -- | -- |
| 373.57 | 0.905 | 4.3 | -2.27 | 0.127 | -- | -- | -- | 0.679 | 20.7 | -- | -- | -- | -- |
| 340.71 | 0.86 | 4.29 | -1.92 | -- | 1.01 | -- | -- | 0.732 | -- | 28.3 | 4263 | -- | -- |
| 426.36 | 0.962 | 4.22 | -- | 0.174 | 1.41 | -- | -- | 0.986 | 22.5 | 25.7 | 5789 | -- | -- |
| 374.48 | 0.904 | 4.3 | -2.27 | -- | -- | -- | -- | 0.678 | -- | -- | -- | -- | -- |
| 509.46 | 1.06 | 4.24 | -- | 0.141 | -- | -- | -- | 0.931 | 19.5 | -- | -- | -- | -- |
| 344.24 | 0.864 | 4.15 | -- | -- | 1.89 | -- | -- | 1.54 | -- | 21.99 | 30417 | -- | -- |
| 510.52 | 1.05 | 4.24 | -- | -- | -- | -- | -- | 0.929 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 325.55 | radiation | 20.0 | 4320 | > th | dose independent | rect. | 16 | 16 |
| 2 | 325.60 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 13 |
| 4 | 326.25 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 11 |
| 5 | 326.35 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 3 | 17 |
| 6 | 326.35 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 3 | 17 |
| 7 | 326.37 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 13 |
| 8 | 326.37 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 13 |
| 9 | 326.40 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 3 | 17 |
| 10 | 326.43 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 13 |
| 24 | 326.70 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 24 | 6 |
| 26 | 326.80 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 9 |
| 27 | 326.80 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 9 |
| 32 | 326.87 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 9 |
| 33 | 326.87 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 11 |
| 34 | 326.87 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 11 |
| 35 | 326.88 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 11 |
| 43 | 326.94 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 2 | NA |
| 49 | 327.17 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 24 | 6 |
| 54 | 327.19 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 15 |
| 57 | 327.20 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 16 |
| 63 | 327.27 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 24 | 6 |
| 64 | 327.27 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 24 | 6 |
| 68 | 327.33 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 69 | 327.33 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 79 | 327.47 | wind | 9.0 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 94 | 327.55 | precipitation | 0.1 | 43200 | > th | dose independent | sin | 2 | NA |
| 95 | 327.55 | precipitation | 0.1 | 43200 | < th | dose independent | sin | 2 | NA |
| 97 | 327.55 | precipitation | 0.1 | 43200 | < th | dose dependent | sin | 2 | NA |
| 109 | 327.63 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 1 | 19 |
| 115 | 327.70 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 9 | NA |
| 129 | 327.88 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 15 |
| 131 | 327.88 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 15 |
| 138 | 327.91 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 139 | 327.92 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 23 | 8 |
| 150 | 327.98 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 15 |
| 183 | 328.20 | wind | 9.0 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 185 | 328.21 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 198 | 328.22 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 22 | 8 |
| 204 | 328.25 | precipitation | 0.1 | 43200 | > th | dose independent | sin | 9 | NA |
| 205 | 328.25 | precipitation | 0.1 | 43200 | < th | dose independent | sin | 9 | NA |
| 209 | 328.25 | precipitation | 0.1 | 43200 | < th | dose dependent | sin | 9 | NA |
| 216 | 328.27 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 220 | 328.28 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 21 | 13 |
| 223 | 328.29 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 2 |
| 238 | 328.34 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 19 |
| 261 | 328.47 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 21 |
| 268 | 328.51 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 21 |
| 269 | 328.51 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 1 | 4 |
| 270 | 328.51 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 21 |
| 302 | 328.65 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 22 | 8 |
| 311 | 328.70 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 1 | 4 |
| 339 | 328.85 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 22 | 8 |
| 340 | 328.85 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 22 | 8 |
| 343 | 328.86 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 4 |
| 348 | 328.88 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 4 |
| 355 | 328.92 | wind | 1.0 | 270 | < th | dose dependent | rect. | 22 | 1 |
| 365 | 328.97 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 12 |
| 374 | 329.02 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 1 | 4 |
| 375 | 329.02 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 12 |
| 376 | 329.02 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 1 | 4 |
| 377 | 329.02 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 12 |
| 396 | 329.13 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 19 |
| 408 | 329.18 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 19 |
| 410 | 329.18 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 19 |
| 444 | 329.30 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 456 | 329.36 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 487 | 329.50 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 513 | 329.65 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 542 | 329.75 | radiation | 40.0 | 4320 | > th | dose independent | rect. | 7 | 3 |
| 558 | 329.76 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 559 | 329.76 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 21 | 10 |
| 578 | 329.85 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 21 | 10 |
| 579 | 329.85 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 21 | 10 |
| 584 | 329.87 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 3 | 6 |
| 640 | 330.09 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 649 | 330.13 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 654 | 330.15 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 702 | 330.32 | wind | 9.0 | 43200 | < th | dose independent | rect. | 24 | 13 |
| 709 | 330.39 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 713 | 330.40 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 24 | 11 |
| 781 | 330.66 | wind | 1.0 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 815 | 330.78 | wind | 1.0 | 43200 | > th | dose independent | rect. | 17 | 3 |
| 817 | 330.79 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 8 | 4 |
| 820 | 330.80 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 824 | 330.81 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 16 | 5 |
| 928 | 331.16 | wind | 9.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 964 | 331.24 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 965 | 331.24 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 8 | 5 |
| 979 | 331.31 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 21 | 10 |
| 996 | 331.36 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 13 | 21 |
| 997 | 331.36 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 13 | 21 |