BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0341200 Os04g0341200|Os04g0341200
(425 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G64260.1 | chr1:23847756-23849915 FORWARD LENGTH=720 66 4e-11
AT1G49920.1 | chr1:18481798-18484233 REVERSE LENGTH=786 65 6e-11
AT1G64255.1 | chr1:23844954-23847206 FORWARD LENGTH=751 65 1e-10
>AT1G64260.1 | chr1:23847756-23849915 FORWARD LENGTH=720
Length = 719
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 4/132 (3%)
Query: 294 EETYKYTISYAKAWRAKQKIIEMRFGTYEASYDNLPRLLGVIEERN-PGSSYEVKKFPSI 352
+E Y + +K K ++I+ FG + S+ +P+L+ N ++ FP
Sbjct: 294 KEKTGYELQTSKMRDGKLEVIKRVFGDEDQSFRVMPKLISAFHSSNGLLVDWQYDLFP-- 351
Query: 353 EHPGKSVLQRAFLALHACKVAFMNCRPVLCIDGTFLTGKYWGQILTAIGVDGNNQVLPLA 412
+P + + F + F +CRP++ +D L GKY +++ A GVD N+ PLA
Sbjct: 352 -NPDFASFRGVFWSFSQSIEGFQHCRPLIVVDTKSLNGKYQLKLMIASGVDAANKFFPLA 410
Query: 413 FAFVESENTDSW 424
FA + +TDSW
Sbjct: 411 FAVTKEVSTDSW 422
>AT1G49920.1 | chr1:18481798-18484233 REVERSE LENGTH=786
Length = 785
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 3/117 (2%)
Query: 309 AKQKIIEMRFGTYEASYDNLPRLLGVIEERNPGSSYEVKKFPSIEH-PGKSVLQRAFLAL 367
AK K I+ FG ++ S+ +P+L+ V+ N G + + + S+ H P + + F A
Sbjct: 311 AKVKAIKRFFGDWDQSFRLIPKLMSVLHSSN-GLLVDWQ-YDSLTHDPEHASFRGLFWAF 368
Query: 368 HACKVAFMNCRPVLCIDGTFLTGKYWGQILTAIGVDGNNQVLPLAFAFVESENTDSW 424
F +CRP++ +D L GKY +++ A D NQ PLAFA + + DSW
Sbjct: 369 SQSIQGFQHCRPLIVVDTKNLGGKYKMKLMIASAFDATNQYFPLAFAVTKEVSVDSW 425
>AT1G64255.1 | chr1:23844954-23847206 FORWARD LENGTH=751
Length = 750
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 8/146 (5%)
Query: 284 YEPRSIIRHIEETYKYTISY----AKAWRAKQKIIEMRFGTYEASYDNLPRLLGVIEERN 339
Y P I +++ +K I Y + AK+K I+ FG ++ S+++ P+L+ + N
Sbjct: 287 YMPTQTISELKKWWKKKIGYELETSDVRLAKEKAIKRVFGDWDQSFEDFPKLMSALCSSN 346
Query: 340 PG-SSYEVKKFPSIEHPGKSVLQRAFLALHACKVAFMNCRPVLCIDGTFLTGKYWGQILT 398
++ FP +P + F A F +CRP++ +D L +Y +++
Sbjct: 347 GLLVDWKYDLFP---NPNFASFCGVFWAFPQSIEGFQHCRPLIVVDTKNLNCEYQLKLMI 403
Query: 399 AIGVDGNNQVLPLAFAFVESENTDSW 424
A GVD N+ PLAFA + +TD W
Sbjct: 404 ASGVDAANKYFPLAFAVTKEVSTDIW 429
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.134 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,817,539
Number of extensions: 439346
Number of successful extensions: 1798
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1795
Number of HSP's successfully gapped: 3
Length of query: 425
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 324
Effective length of database: 8,337,553
Effective search space: 2701367172
Effective search space used: 2701367172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)