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Os04g0329500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF295 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.94 (0.0224) R2 : 0.722
β1 : 0.756 (0.0818) R2dD : 0.054 R2D : 0.037
β2 : 1.64 (0.0543) R2dC : 0.558 R2C : 0.533
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.553 (0.0477) R2dN8 : 0.11 R2N8 : 0.108
σ : 0.42
deviance : 80.52
__
_____
C
peak time of C : 21.9
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
76.92 0.412 6.89 0.978 1.62 -0.775 -0.0379 5.17 -0.556 21.9 999.6 1576 -- --
78.32 0.412 6.95 0.71 1.6 -0.502 0.00119 -- -0.559 22 993.7 12085 -- --
76.92 0.408 6.89 0.969 1.62 -0.725 -- 4.89 -0.555 21.9 999.6 1632 -- --
78.01 0.411 6.94 0.713 1.63 -0.687 -- -- -0.569 21.9 992.5 12097 -- --
233.47 0.712 6.86 0.924 -- -0.771 -- 5.06 -0.571 -- 998.4 2320 -- --
80.49 0.421 6.94 0.753 1.64 -- -0.0873 -- -0.553 21.9 -- -- -- --
80.52 0.42 6.94 0.756 1.64 -- -- -- -0.553 21.9 -- -- -- --
235.95 0.715 6.9 0.704 -- -0.843 -- -- -0.577 -- 992.7 12804 -- --
91.3 0.445 6.94 -- 1.66 -0.772 -- -- -0.597 21.9 992 12093 -- --
241.3 0.726 6.89 0.775 -- -- -- -- -0.553 -- -- -- -- --
95.6 0.457 6.96 -- 1.64 -- -- -- -0.637 21.9 -- -- -- --
248.5 0.734 6.92 -- -- -1.05 -- -- -0.662 -- 993.7 12199 -- --
257.14 0.748 6.91 -- -- -- -- -- -0.639 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 69.98 temperature 30.0 90 < th dose dependent rect. 1 9
7 71.34 temperature 10.0 43200 > th dose independent rect. 9 4
11 71.74 temperature 15.0 10 > th dose dependent rect. 20 16
12 71.79 temperature 30.0 270 < th dose dependent rect. 23 8
35 72.34 radiation 1.0 10 > th dose dependent rect. 7 5
41 72.42 temperature 30.0 90 < th dose dependent rect. 3 7
74 72.70 radiation 1.0 10 > th dose dependent rect. 16 20
82 72.80 temperature 20.0 30 > th dose independent rect. 20 16
102 72.92 radiation 10.0 30 > th dose independent rect. 7 5
139 73.11 wind 7.0 30 < th dose independent rect. 12 8
140 73.11 radiation 20.0 30 < th dose independent rect. 1 9
165 73.21 humidity 50.0 43200 > th dose independent rect. 22 8
216 73.54 wind 7.0 30 < th dose independent rect. 12 20
249 73.70 humidity 90.0 10 < th dose dependent rect. 8 4
257 73.74 radiation 40.0 4320 < th dose independent rect. 6 2
261 73.75 humidity 80.0 30 < th dose independent rect. 8 4
284 73.83 radiation 40.0 30 < th dose dependent rect. 1 10
286 73.84 wind 7.0 30 < th dose independent rect. 12 22
298 73.90 radiation 30.0 4320 > th dose dependent rect. 16 1
313 73.91 radiation 30.0 1440 < th dose independent rect. 16 5
325 73.97 humidity 70.0 4320 > th dose independent rect. 20 10
356 74.04 wind 1.0 30 > th dose independent rect. 12 20
360 74.07 wind 9.0 10 < th dose dependent rect. 12 8
366 74.10 temperature 10.0 30 > th dose dependent rect. 12 8
385 74.18 wind 9.0 14400 < th dose independent rect. 24 2
392 74.22 radiation 40.0 4320 < th dose independent rect. 4 4
397 74.23 humidity 70.0 30 > th dose independent rect. 1 10
414 74.29 humidity 60.0 43200 < th dose independent rect. 3 4
418 74.30 wind 9.0 14400 > th dose dependent rect. 19 1
423 74.33 temperature 25.0 90 < th dose independent rect. 24 10
429 74.35 atmosphere 1010.0 30 < th dose independent rect. 12 8
434 74.37 temperature 10.0 1440 > th dose independent rect. 13 8
438 74.37 temperature 10.0 1440 > th dose independent rect. 21 16
441 74.37 atmosphere 995.0 1440 > th dose independent rect. 21 16
442 74.37 humidity 80.0 10 > th dose dependent rect. 8 2
449 74.39 radiation 40.0 4320 > th dose independent rect. 7 1
457 74.39 temperature 10.0 30 > th dose independent rect. 12 8
468 74.39 temperature 10.0 30 > th dose independent rect. 20 16
469 74.39 atmosphere 995.0 30 > th dose independent rect. 20 16
471 74.39 radiation 40.0 4320 > th dose dependent rect. 7 1
492 74.40 wind 9.0 30 < th dose independent rect. 20 16
499 74.41 atmosphere 1015.0 30 < th dose dependent rect. 12 8
508 74.43 radiation 40.0 4320 < th dose independent rect. 2 6
511 74.43 wind 9.0 270 < th dose independent rect. 9 23
529 74.47 precipitation 0.1 10 < th dose independent rect. 12 8
533 74.47 radiation 40.0 4320 < th dose independent rect. 16 16
535 74.47 precipitation 0.1 10 < th dose dependent rect. 12 8
546 74.51 wind 1.0 30 > th dose independent rect. 1 7
554 74.53 wind 9.0 14400 > th dose independent rect. 19 1
555 74.53 atmosphere 995.0 4320 > th dose independent rect. 6 2
557 74.53 temperature 20.0 10 > th dose dependent rect. 2 10
579 74.58 humidity 70.0 43200 > th dose independent rect. 5 1
582 74.58 temperature 20.0 10 > th dose dependent rect. 7 5
588 74.60 temperature 15.0 14400 < th dose independent rect. 7 3
595 74.61 humidity 60.0 43200 < th dose dependent rect. 5 2
619 74.64 humidity 70.0 43200 < th dose dependent rect. 1 6
631 74.66 temperature 10.0 1440 > th dose independent rect. 9 4
634 74.66 atmosphere 995.0 1440 > th dose independent rect. 9 4
637 74.66 temperature 10.0 1440 > th dose independent rect. 13 20
660 74.68 temperature 10.0 30 > th dose dependent rect. 8 4
680 74.70 wind 1.0 30 > th dose independent rect. 8 4
686 74.71 wind 1.0 30 > th dose independent rect. 12 8
696 74.72 wind 7.0 270 < th dose independent rect. 2 15
702 74.72 humidity 90.0 10 < th dose dependent rect. 24 12
709 74.74 precipitation 0.1 30 < th dose independent rect. 20 16
713 74.74 precipitation 0.1 30 < th dose dependent rect. 20 16
717 74.75 precipitation 0.1 30 < th dose independent rect. 12 20
722 74.75 precipitation 0.1 30 < th dose dependent rect. 12 20
723 74.76 temperature 10.0 30 > th dose independent rect. 8 4
725 74.76 atmosphere 995.0 30 > th dose independent rect. 8 4
726 74.76 atmosphere 1005.0 30 > th dose independent rect. 8 4
727 74.76 atmosphere 1015.0 30 < th dose independent rect. 8 4
729 74.76 precipitation 0.1 30 < th dose independent rect. 8 4
732 74.76 temperature 10.0 30 > th dose independent rect. 12 20
734 74.76 precipitation 0.1 30 < th dose dependent rect. 8 4
736 74.77 humidity 60.0 43200 > th dose independent rect. 1 1
742 74.77 humidity 90.0 10 < th dose dependent rect. 22 14
744 74.78 temperature 15.0 14400 > th dose independent rect. 8 1
768 74.79 radiation 20.0 270 < th dose dependent rect. 23 9
772 74.80 atmosphere 995.0 30 > th dose dependent rect. 8 4
773 74.81 temperature 15.0 14400 < th dose independent rect. 5 4
784 74.82 wind 9.0 30 < th dose independent rect. 8 4
797 74.84 humidity 60.0 43200 > th dose independent rect. 3 3
816 74.86 temperature 20.0 30 > th dose dependent sin 7 NA
819 74.87 humidity 90.0 270 < th dose independent rect. 7 2
880 74.91 temperature 20.0 4320 < th dose independent rect. 15 1
881 74.91 humidity 60.0 43200 > th dose independent rect. 3 1
905 74.93 atmosphere 995.0 30 > th dose independent rect. 12 8
907 74.93 atmosphere 1015.0 30 < th dose independent rect. 20 16
908 74.93 temperature 25.0 90 < th dose independent rect. 16 18
919 74.94 radiation 20.0 30 < th dose independent rect. 3 8
936 74.96 humidity 60.0 43200 > th dose independent rect. 1 3
946 74.97 precipitation 0.1 10 < th dose independent rect. 12 22
951 74.97 precipitation 0.1 10 < th dose dependent rect. 12 22
952 74.98 radiation 20.0 10 > th dose independent sin 6 NA