Os04g0321400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 50S ribosomal protein L27.
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Os04g0321400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 50S ribosomal protein L27.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 143.1 | 0.562 | 2.88 | -0.0631 | 0.157 | 0.278 | 0.392 | 1.53 | -0.00716 | 13.3 | 50.66 | 5524 | -- | -- |
| 144 | 0.559 | 2.89 | -0.0359 | 0.162 | 0.751 | 0.408 | -- | 0.0205 | 13.3 | 49.89 | 5459 | -- | -- |
| 143.67 | 0.558 | 2.87 | -0.0569 | 0.157 | 0.254 | -- | 1.52 | -0.011 | 13.7 | 50.61 | 5493 | -- | -- |
| 144.24 | 0.559 | 2.9 | -0.124 | 0.167 | 0.816 | -- | -- | 0.0216 | 13.7 | 49.95 | 5457 | -- | -- |
| 145.19 | 0.561 | 2.88 | -0.0477 | -- | 0.2 | -- | 1.65 | -0.0148 | -- | 51 | 5502 | -- | -- |
| 152.1 | 0.578 | 2.91 | 0.109 | 0.141 | -- | 0.251 | -- | -0.042 | 13.8 | -- | -- | -- | -- |
| 152.32 | 0.578 | 2.91 | 0.117 | 0.145 | -- | -- | -- | -0.0402 | 14.5 | -- | -- | -- | -- |
| 146 | 0.563 | 2.9 | -0.121 | -- | 0.803 | -- | -- | 0.0117 | -- | 49.92 | 5457 | -- | -- |
| 144.55 | 0.56 | 2.9 | -- | 0.17 | 0.772 | -- | -- | 0.0279 | 14.1 | 49.53 | 5457 | -- | -- |
| 153.56 | 0.579 | 2.91 | 0.111 | -- | -- | -- | -- | -0.0438 | -- | -- | -- | -- | -- |
| 152.68 | 0.578 | 2.92 | -- | 0.143 | -- | -- | -- | -0.0532 | 14.5 | -- | -- | -- | -- |
| 146.22 | 0.563 | 2.9 | -- | -- | 0.792 | -- | -- | 0.028 | -- | 49 | 5457 | -- | -- |
| 153.88 | 0.579 | 2.92 | -- | -- | -- | -- | -- | -0.0561 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 137.22 | wind | 1.0 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 2 | 138.26 | wind | 1.0 | 90 | < th | dose independent | rect. | 4 | 1 |
| 5 | 141.76 | humidity | 90.0 | 30 | > th | dose independent | rect. | 13 | 3 |
| 9 | 141.77 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 13 | 3 |
| 13 | 141.80 | humidity | 90.0 | 30 | > th | dose independent | rect. | 13 | 1 |
| 17 | 141.81 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 13 | 1 |
| 42 | 142.42 | wind | 1.0 | 90 | < th | dose dependent | rect. | 12 | 1 |
| 44 | 142.57 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 10 | 1 |
| 45 | 142.71 | wind | 1.0 | 90 | < th | dose dependent | rect. | 1 | 4 |
| 62 | 143.23 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 5 | 1 |
| 69 | 143.40 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 73 | 143.82 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 14 | 3 |
| 95 | 144.07 | wind | 1.0 | 90 | < th | dose independent | rect. | 12 | 1 |
| 97 | 144.15 | humidity | 50.0 | 4320 | < th | dose dependent | rect. | 14 | 4 |
| 130 | 144.17 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 134 | 144.23 | temperature | 20.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 135 | 144.24 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 155 | 144.33 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 157 | 144.34 | humidity | 50.0 | 4320 | < th | dose independent | sin | 14 | NA |
| 158 | 144.34 | humidity | 50.0 | 4320 | < th | dose dependent | sin | 12 | NA |
| 159 | 144.35 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 14 | 3 |
| 161 | 144.35 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 13 | 16 |
| 162 | 144.36 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 13 | 7 |
| 172 | 144.36 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 13 | 20 |
| 193 | 144.39 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 197 | 144.40 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 219 | 144.56 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 220 | 144.57 | humidity | 50.0 | 4320 | > th | dose independent | sin | 14 | NA |
| 221 | 144.57 | humidity | 50.0 | 90 | < th | dose independent | rect. | 12 | 4 |
| 223 | 144.57 | humidity | 50.0 | 10 | < th | dose dependent | sin | 12 | NA |
| 250 | 144.65 | humidity | 50.0 | 10 | < th | dose dependent | rect. | 13 | 5 |
| 277 | 144.73 | humidity | 80.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 279 | 144.74 | wind | 3.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 280 | 144.74 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 285 | 144.76 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 287 | 144.76 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 1 | 5 |
| 289 | 144.77 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 291 | 144.77 | temperature | 30.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 292 | 144.77 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 295 | 144.77 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 296 | 144.77 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 297 | 144.77 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 299 | 144.77 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 304 | 144.77 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 305 | 144.77 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 306 | 144.77 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 311 | 144.77 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 312 | 144.78 | wind | 9.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 324 | 144.81 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 343 | 144.88 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 350 | 144.91 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 425 | 145.06 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 5 | 1 |
| 427 | 145.07 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 457 | 145.14 | humidity | 50.0 | 90 | < th | dose dependent | rect. | 12 | 4 |
| 480 | 145.21 | humidity | 50.0 | 10 | > th | dose independent | sin | 12 | NA |
| 482 | 145.22 | humidity | 50.0 | 10 | < th | dose independent | sin | 12 | NA |
| 483 | 145.22 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 5 | 1 |
| 506 | 145.23 | humidity | 60.0 | 4320 | < th | dose dependent | rect. | 15 | 1 |
| 520 | 145.25 | humidity | 50.0 | 30 | > th | dose independent | rect. | 6 | 23 |
| 550 | 145.28 | atmosphere | 1015.0 | 4320 | > th | dose dependent | sin | 23 | NA |
| 631 | 145.35 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 12 | 1 |
| 644 | 145.36 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 18 | 2 |
| 678 | 145.38 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 707 | 145.39 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 12 | 1 |
| 763 | 145.45 | humidity | 60.0 | 4320 | < th | dose dependent | sin | 16 | NA |
| 821 | 145.50 | atmosphere | 1015.0 | 4320 | > th | dose independent | sin | 23 | NA |
| 827 | 145.50 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 849 | 145.51 | atmosphere | 1015.0 | 4320 | < th | dose independent | sin | 23 | NA |
| 884 | 145.52 | wind | 1.0 | 90 | < th | dose dependent | rect. | 1 | 11 |
| 900 | 145.56 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 953 | 145.59 | humidity | 50.0 | 4320 | < th | dose independent | no | NA | NA |