BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0321400 Os04g0321400|Os04g0321400
         (332 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G15220.1  | chr5:4941466-4942133 REVERSE LENGTH=155            194   6e-50
AT2G16930.2  | chr2:7341492-7342118 FORWARD LENGTH=155            193   1e-49
AT3G42170.1  | chr3:14321838-14323928 FORWARD LENGTH=697          112   3e-25
AT5G40950.1  | chr5:16410866-16411845 FORWARD LENGTH=199           92   4e-19

>AT5G15220.1 | chr5:4941466-4942133 REVERSE LENGTH=155
          Length = 154

 Score =  194 bits (493), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 85/100 (85%), Positives = 94/100 (94%)

Query: 221 LIFKRWATKKTAGSTKNGRDSNPKYLGVKKFGGEKVEPGNIIVRQRGTRFHPGNYVGMGK 280
           L+FKRWATKKTAGSTKNGRDSNPK+LGVKKFGGE V PGNIIVRQRGTRFHPG+YVG+GK
Sbjct: 41  LVFKRWATKKTAGSTKNGRDSNPKFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGK 100

Query: 281 DHTLFCLKEGHVRFERNKLTGRKWVHVDPVAGHVLHPVYT 320
           DHTLF LKEG VRFE++K+TGRKW+HVDP  GHVLHP+YT
Sbjct: 101 DHTLFALKEGRVRFEKSKITGRKWIHVDPTGGHVLHPIYT 140



>AT2G16930.2 | chr2:7341492-7342118 FORWARD LENGTH=155
          Length = 154

 Score =  193 bits (490), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 84/100 (84%), Positives = 94/100 (94%)

Query: 221 LIFKRWATKKTAGSTKNGRDSNPKYLGVKKFGGEKVEPGNIIVRQRGTRFHPGNYVGMGK 280
           L+ KRWATKKTAGSTKNGRDSNPK+LGVKKFGGE V PGNIIVRQRGTRFHPG+YVG+GK
Sbjct: 41  LVLKRWATKKTAGSTKNGRDSNPKFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGK 100

Query: 281 DHTLFCLKEGHVRFERNKLTGRKWVHVDPVAGHVLHPVYT 320
           DHTLF LKEG VRFE++K+TGRKW+HVDP+ GHVLHP+YT
Sbjct: 101 DHTLFALKEGRVRFEKSKITGRKWIHVDPIGGHVLHPIYT 140



>AT3G42170.1 | chr3:14321838-14323928 FORWARD LENGTH=697
          Length = 696

 Score =  112 bits (280), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 107/202 (52%), Gaps = 20/202 (9%)

Query: 12  DDNFIASMAVPMAEKIEKYWETCNKLLSIATILDPRYKLKSIEYFYGLLYPSEKDVKFEH 71
           +D F+  +A  M EK++KYW  C+ +L++A ++DPR+K+K +E+ +  ++  +     + 
Sbjct: 484 EDPFVTGIAKTMQEKVDKYWRDCSLVLAMAVVMDPRFKMKLVEFSFSKIFGEDAGKNIKT 543

Query: 72  MRRCFSELFDEYSKQATMQSSSVVDTSRNXXXXXXXXXXXXXXXXXTIVGLEKYIQDSNS 131
           +     ELF EY    + Q+++                         +   + YI ++ +
Sbjct: 544 VDDGIHELFTEYMALPSPQNTT-----------------SEGGKADGLSDFDTYIMET-T 585

Query: 132 SQQTRSELDVYLDDPPHPGISDTSFDILAWWKLYGSKYPIISRMAHDILSVPMSTVASES 191
            Q  +SELD YLD+   P + +  FD+L WWK    KYP +S+MA DILS+P+S  A + 
Sbjct: 586 GQNLKSELDQYLDETLLPRVQE--FDVLDWWKQNKLKYPTLSKMARDILSIPVSAAAFDY 643

Query: 192 CFSLANQALCEKRCSLLPETLE 213
            F +  + + E + SL PET+E
Sbjct: 644 VFDMEPREMDEYKTSLRPETVE 665



>AT5G40950.1 | chr5:16410866-16411845 FORWARD LENGTH=199
          Length = 198

 Score = 92.0 bits (227), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 44/70 (62%), Positives = 54/70 (77%)

Query: 227 ATKKTAGSTKNGRDSNPKYLGVKKFGGEKVEPGNIIVRQRGTRFHPGNYVGMGKDHTLFC 286
           A KK AGSTKNGRDS  + LGVK +G +  +PG IIVRQRGT+FH G  VG+GKDHT+F 
Sbjct: 59  AHKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFS 118

Query: 287 LKEGHVRFER 296
           L +G V+FE+
Sbjct: 119 LIDGLVKFEK 128



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.133    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,336,206
Number of extensions: 307725
Number of successful extensions: 638
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 636
Number of HSP's successfully gapped: 4
Length of query: 332
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 233
Effective length of database: 8,392,385
Effective search space: 1955425705
Effective search space used: 1955425705
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)