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Os04g0298600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.8 (0.0157) R2 : 0.00309
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0394 (0.0331) R2dN8 : 0.00399 R2N8 : 0.00309
σ : 0.296
deviance : 40.3
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
13.74 0.174 10.7 -0.00603 0.535 0.49 -0.184 -0.417 0.115 6.92 30.62 234 -- --
13.91 0.174 10.7 -0.0745 0.535 0.495 -0.259 -- 0.102 6.95 30.41 222 -- --
13.82 0.173 10.7 0.00118 0.539 0.488 -- -0.481 0.119 6.93 30.6 228 -- --
14.07 0.175 10.8 -0.0795 0.535 0.486 -- -- 0.0988 6.98 30.06 222 -- --
24.84 0.232 10.7 0.137 -- 0.989 -- -0.732 0.184 -- 37.53 393 -- --
17 0.193 10.8 -0.199 0.656 -- -0.21 -- 0.00423 6.35 -- -- -- --
17.11 0.194 10.8 -0.201 0.655 -- -- -- 0.00495 6.36 -- -- -- --
24.98 0.233 10.7 0.0277 -- 0.942 -- -- 0.176 -- 31.61 387 -- --
14.23 0.176 10.7 -- 0.536 0.509 -- -- 0.113 6.98 29.94 227 -- --
39.41 0.293 10.8 -0.184 -- -- -- -- 0.0189 -- -- -- -- --
18.18 0.199 10.8 -- 0.652 -- -- -- 0.0274 6.38 -- -- -- --
25 0.233 10.7 -- -- 0.934 -- -- 0.171 -- 31.68 386 -- --
40.3 0.296 10.8 -- -- -- -- -- 0.0394 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 13.22 humidity 80.0 43200 > th dose independent rect. 6 1
2 13.31 humidity 80.0 43200 < th dose independent rect. 6 1
3 13.31 humidity 80.0 14400 > th dose independent rect. 17 2
7 13.36 humidity 80.0 14400 < th dose independent rect. 16 3
10 13.37 humidity 80.0 14400 > th dose dependent rect. 18 1
12 13.38 temperature 20.0 270 > th dose dependent rect. 16 22
28 13.48 humidity 90.0 4320 > th dose dependent rect. 6 2
46 13.54 humidity 90.0 14400 < th dose independent rect. 21 1
47 13.54 precipitation 0.1 43200 > th dose independent rect. 17 1
56 13.56 precipitation 0.1 43200 < th dose independent rect. 17 1
59 13.56 precipitation 0.1 43200 < th dose dependent rect. 17 1
61 13.56 temperature 10.0 270 > th dose dependent rect. 5 22
65 13.57 temperature 30.0 270 < th dose dependent rect. 24 23
87 13.63 humidity 90.0 14400 > th dose dependent rect. 18 8
92 13.64 humidity 90.0 14400 > th dose independent rect. 17 9
103 13.65 humidity 90.0 14400 > th dose independent rect. 18 6
108 13.65 radiation 1.0 14400 > th dose independent rect. 17 13
125 13.67 humidity 70.0 14400 > th dose dependent rect. 13 6
142 13.69 humidity 90.0 14400 > th dose independent rect. 21 1
144 13.69 humidity 90.0 14400 < th dose independent rect. 18 6
157 13.70 radiation 1.0 14400 > th dose independent rect. 17 2
177 13.70 humidity 80.0 14400 > th dose dependent sin 17 NA
179 13.70 temperature 20.0 4320 > th dose dependent rect. 17 1
194 13.71 radiation 1.0 14400 < th dose independent rect. 17 13
214 13.72 humidity 70.0 14400 > th dose dependent rect. 13 2
228 13.72 temperature 30.0 270 < th dose dependent rect. 9 23
229 13.73 radiation 1.0 14400 < th dose independent rect. 17 1
281 13.75 humidity 90.0 14400 > th dose independent sin 16 NA
286 13.75 temperature 25.0 4320 > th dose independent rect. 16 5
287 13.75 temperature 25.0 4320 < th dose independent rect. 16 5
325 13.76 temperature 30.0 4320 < th dose dependent rect. 17 1
326 13.76 wind 9.0 43200 > th dose dependent rect. 19 2
341 13.76 temperature 15.0 10 > th dose dependent rect. 6 23
343 13.77 humidity 80.0 14400 > th dose independent sin 21 NA
391 13.77 temperature 30.0 270 < th dose dependent rect. 21 23
393 13.78 radiation 1.0 14400 > th dose independent rect. 5 1
394 13.78 radiation 1.0 14400 < th dose independent rect. 5 1
418 13.78 precipitation 0.1 43200 > th dose dependent rect. 17 1
445 13.79 temperature 30.0 270 < th dose dependent no NA NA
462 13.80 humidity 80.0 14400 < th dose independent sin 21 NA
495 13.80 humidity 80.0 14400 > th dose dependent rect. 5 17
500 13.80 humidity 80.0 14400 > th dose dependent rect. 1 21
503 13.80 temperature 30.0 270 < th dose dependent rect. 17 23
558 13.82 wind 9.0 43200 < th dose independent rect. 19 2
576 13.82 temperature 10.0 4320 > th dose dependent rect. 17 2
611 13.83 humidity 90.0 14400 < th dose independent sin 17 NA
613 13.83 wind 9.0 43200 > th dose independent rect. 19 2
622 13.83 temperature 25.0 4320 < th dose independent rect. 14 12
630 13.83 temperature 20.0 4320 > th dose dependent sin 18 NA
677 13.83 temperature 30.0 270 < th dose dependent rect. 14 23
681 13.84 temperature 25.0 4320 > th dose independent sin 16 NA
682 13.84 temperature 25.0 4320 < th dose independent sin 16 NA
684 13.84 temperature 25.0 4320 < th dose independent rect. 17 1
694 13.84 temperature 25.0 4320 > th dose independent rect. 14 12
758 13.85 temperature 20.0 14400 < th dose independent rect. 20 1
851 13.86 temperature 25.0 4320 > th dose independent rect. 17 1
882 13.86 radiation 1.0 14400 < th dose independent rect. 17 19
883 13.86 humidity 90.0 14400 > th dose independent rect. 6 20
932 13.86 humidity 80.0 14400 > th dose dependent rect. 17 22