BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0298600 Os04g0298600|Os04g0298600
         (906 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G28430.1  | chr3:10657441-10662404 REVERSE LENGTH=838          748   0.0  

>AT3G28430.1 | chr3:10657441-10662404 REVERSE LENGTH=838
          Length = 837

 Score =  748 bits (1930), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/841 (50%), Positives = 533/841 (63%), Gaps = 81/841 (9%)

Query: 70  MWL-FWRSRNRFSLEELRYLTDQLQKVHIVYEANKDFVVEALRSIAELMIYGDQHDPSYF 128
           MWL F R R+RFSL ELRYLTDQL+K+ IV EANKD V+EALRSIAE++ YGDQHDP +F
Sbjct: 1   MWLSFLRPRDRFSLAELRYLTDQLRKIQIVNEANKDLVIEALRSIAEILTYGDQHDPLFF 60

Query: 129 EFFMEKQIMGEFARILRISKLSRVSLQLLQTMSIMIQNLRNEHSIYYIFSNEHINFLIT- 187
           EFFMEKQ+MGEF RILR+SK   VS+QLLQTMSIMIQNL++E +IYY+FSNE++N+LIT 
Sbjct: 61  EFFMEKQVMGEFVRILRVSKTVTVSVQLLQTMSIMIQNLKSEQAIYYLFSNEYVNYLITY 120

Query: 188 ------------------AISGKLNKNTISLLVKTKNDEVISFPLYVEALKFAFHEDSMI 229
                             A+SGKLNK+TISLL+KT+ND V+SFPLYVE ++FAFHE++MI
Sbjct: 121 TFDFQHEELLSYYISFLRAVSGKLNKHTISLLLKTENDVVVSFPLYVEGIQFAFHEENMI 180

Query: 230 RVAIRTLTLNVYHGRLDSLDGHYRSFLSVGDESVNRFVSRAPLSDYFSDMVNHFQKQCID 289
           R A+R LTLNVYH               VGDESVN +V   P ++YFS +++ FQKQC+D
Sbjct: 181 RTAVRALTLNVYH---------------VGDESVNDYVVSPPHTEYFSKLISFFQKQCMD 225

Query: 290 LDKLVVRSVRNADSAVPTASVEDAIVQIEDTLYYFSDVMSSGIPDLGRFITENILQLLVF 349
           L  +V+ ++++  S      +  A+  IEDTLYYFSDV+S+GIPD+GR IT++ILQ L  
Sbjct: 226 LSAMVLNTLKSP-SPDSGGKLFSAVDGIEDTLYYFSDVISAGIPDIGRLITDHILQHLTL 284

Query: 350 RFLLPSLQRQST-DLGISVTTSMYLICCILHIFKNKDMASTVAAALF-------HQPDCH 401
             LLPSL  ++  D+ +   TS+YL+ CIL I K KD+A+  AA LF             
Sbjct: 285 PLLLPSLCSEAVNDISVDPVTSLYLLSCILRIVKIKDLANMTAATLFCPVKAFISSSLVK 344

Query: 402 DRKQGTPNGYTSEHENGISDNQGTSTSDIDQSNEDKSDILSSSNTH-CLPDDPSSSDCCQ 460
                 P G T  + NG  D +G +     Q +   + +    N+H C  D P S     
Sbjct: 345 PNSSLAPEGLT--YVNGHPD-KGVTEEANQQCSSTAAGMSDDGNSHLCSEDTPKSIFNNS 401

Query: 461 GNTLREHLLSYIISGDDFQALGSLCLFSTLLQTKELDESMLDALGILPQRKQHKKLLLQA 520
             T RE LL YI  GDD QA GSL + +TLLQTKEL+ESMLDA GILPQRKQHKKLLLQ+
Sbjct: 402 HMTFRETLLQYISEGDDVQAQGSLFVLATLLQTKELEESMLDAFGILPQRKQHKKLLLQS 461

Query: 521 LVGEDLAERQLFSSSSGLADDSICSDFDMYVRKLQDKYGLKCHHPRQM-TSKFHRYQVLD 579
           LVGED  E QLFS  +G   D + S+ D Y+R+L++++G+ C  P      + HR+QV+D
Sbjct: 462 LVGEDTGEEQLFSPRNGSMRDGLSSELDWYLRRLEEQFGVCCSLPGAARCPRVHRHQVVD 521

Query: 580 ALVALFCRSNVSADVRLVGGWLFRQLLPHGEEEFTAFHLKWLKDSHKDYSIKLLDESGGC 639
            LV L CR N+SA+    GGWL RQLLP+ E EF   HLK L  S++     L  E  G 
Sbjct: 522 TLVTLLCRENISAETLWDGGWLLRQLLPYSEAEFNRKHLKMLNVSYEKCKNSLTREIKGI 581

Query: 640 WRDLLVPIVKEAWKNCKKGDSSIAIAERIYEMVKEMWPQRFTSVIIVLMDMREQ------ 693
           W DLL+ ++ + W+ CK+             +++   PQ+    +++ +D          
Sbjct: 582 WPDLLIRVLLDEWRKCKR-------------VIEAPSPQKEPKSVLLQLDRSSSNDNSVS 628

Query: 694 -----PRERTEMKANGFVLQRQVILFCLGETLTDQPPIFSPTDLPVNNRATLAGFDGSVP 748
                  ER       FVL  Q+ +F LG +L +QPPI+ P D    +RAT AG D SVP
Sbjct: 629 ESSFTAGERMCEVVKVFVLLHQLQIFSLGRSLPEQPPIYPPADRSETSRATRAGLDVSVP 688

Query: 749 KPGLEVNLVDAVPCRIAFERGKERHFCFLALSNGTSGWIXXXXXXXXXXXRGIVRVTAPL 808
           KPG E+ LVDAVPCRIAFERGKER F FLALS+G SGWI            GIVRVTAPL
Sbjct: 689 KPGTELKLVDAVPCRIAFERGKERDFSFLALSSGESGWI-----VLADPDNGIVRVTAPL 743

Query: 809 AGSDPRIDEKHAKWLHLRIRPSTVPFLDTEK---YKGKTRKYLVDGRWTLAFRDEQSLFR 865
           AG  PRIDEKH +WLHLRIRPST+P LD  K   Y+    K LVDGRW LAFRD++S   
Sbjct: 744 AGCKPRIDEKHPRWLHLRIRPSTLPLLDPTKRGVYEKLKSKGLVDGRWILAFRDDESCHS 803

Query: 866 A 866
           A
Sbjct: 804 A 804



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 17,641,115
Number of extensions: 745477
Number of successful extensions: 1866
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1857
Number of HSP's successfully gapped: 1
Length of query: 906
Length of database: 11,106,569
Length adjustment: 108
Effective length of query: 798
Effective length of database: 8,145,641
Effective search space: 6500221518
Effective search space used: 6500221518
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 116 (49.3 bits)