Os04g0295400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Jacalin-related lectin domain containing protein.
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Os04g0295400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Jacalin-related lectin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 177.99 | 0.627 | 8.96 | -1.51 | 1.48 | -3.27 | 1.05 | -2.71 | -0.41 | 8.87 | 0.8302 | 1442 | -- | -- |
| 180.24 | 0.625 | 8.99 | -1.65 | 1.27 | -2.86 | 1.15 | -- | -0.425 | 7.98 | 1.185 | 1501 | -- | -- |
| 180.85 | 0.626 | 8.97 | -1.47 | 1.36 | -3.39 | -- | -2.89 | -0.408 | 8.55 | 0.8175 | 1464 | -- | -- |
| 184.16 | 0.632 | 9 | -1.7 | 1.32 | -2.82 | -- | -- | -0.442 | 8.38 | 1.248 | 1475 | -- | -- |
| 261.42 | 0.753 | 9.01 | -1.54 | -- | -3.89 | -- | -2.73 | -0.454 | -- | 0.9429 | 1516 | -- | -- |
| 261.44 | 0.758 | 8.92 | -1.12 | 1.51 | -- | 0.889 | -- | -0.0984 | 8.83 | -- | -- | -- | -- |
| 264.09 | 0.761 | 8.92 | -1.09 | 1.51 | -- | -- | -- | -0.0976 | 8.87 | -- | -- | -- | -- |
| 265.94 | 0.76 | 9.05 | -1.72 | -- | -3.39 | -- | -- | -0.49 | -- | 1.417 | 1525 | -- | -- |
| 247.24 | 0.732 | 8.93 | -- | 1.44 | -2.42 | -- | -- | -0.194 | 6.63 | 2.175 | 1627 | -- | -- |
| 393.44 | 0.927 | 8.96 | -1.09 | -- | -- | -- | -- | -0.0868 | -- | -- | -- | -- | -- |
| 295.36 | 0.804 | 8.89 | -- | 1.5 | -- | -- | -- | 0.0237 | 8.92 | -- | -- | -- | -- |
| 332.9 | 0.85 | 9 | -- | -- | -2.66 | -- | -- | -0.261 | -- | 2.34 | 1540 | -- | -- |
| 424.72 | 0.962 | 8.93 | -- | -- | -- | -- | -- | 0.034 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 170.11 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 6 | 171.37 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 17 |
| 10 | 171.42 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 16 | 171.56 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 29 | 171.83 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 45 | 172.26 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 13 |
| 63 | 172.46 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 7 |
| 74 | 172.63 | radiation | 1 | 1440 | < th | dose dependent | sin | 18 | NA |
| 92 | 173.60 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 143 | 176.12 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 17 |
| 149 | 176.18 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 166 | 176.26 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 11 |
| 167 | 176.29 | radiation | 1 | 1440 | < th | dose independent | sin | 16 | NA |
| 187 | 176.36 | radiation | 1 | 1440 | > th | dose independent | sin | 16 | NA |
| 204 | 176.44 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 13 |
| 206 | 176.48 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 13 |
| 211 | 176.51 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 255 | 176.60 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 7 |
| 291 | 176.83 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 15 |
| 358 | 177.65 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 360 | 177.67 | temperature | 25 | 1440 | > th | dose independent | sin | 17 | NA |
| 369 | 177.72 | temperature | 25 | 1440 | < th | dose independent | rect. | 13 | 11 |
| 407 | 178.24 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 409 | 178.24 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 19 |
| 410 | 178.24 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 412 | 178.26 | radiation | 1 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 421 | 178.35 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 14 |
| 434 | 178.55 | temperature | 25 | 1440 | < th | dose independent | sin | 17 | NA |
| 439 | 178.57 | radiation | 1 | 1440 | < th | dose dependent | rect. | 21 | 22 |
| 442 | 178.59 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 22 |
| 448 | 178.62 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 459 | 178.65 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 464 | 178.67 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 466 | 178.69 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 17 |
| 492 | 178.78 | temperature | 25 | 1440 | > th | dose dependent | sin | 17 | NA |
| 737 | 181.49 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 812 | 182.06 | temperature | 10 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 951 | 183.25 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 21 |