BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0295400 Os04g0295400|AK067477
(150 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G73040.1 | chr1:27475159-27475777 REVERSE LENGTH=177 59 7e-10
AT1G19715.3 | chr1:6816934-6819432 REVERSE LENGTH=602 48 2e-06
>AT1G73040.1 | chr1:27475159-27475777 REVERSE LENGTH=177
Length = 176
Score = 59.3 bits (142), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 70/141 (49%), Gaps = 6/141 (4%)
Query: 9 GPWGGPGGDYRDVQVAP-YRLVRLTIRSGDTVDGISFTYIGNDGLVYHMGHWGSDGGVPH 67
GPWGG GG D + R +RL +D IS Y N H G G
Sbjct: 16 GPWGGNGGTTWDDGIYDGVREIRLVYDH--CIDSISVIYDKNGKPAKSEKHGGVGGNKTS 73
Query: 68 EIHLGL-MDFVMEISGTTGMWVSGMSNVLRSLKITTLKRTYGPYGNPKAGIPFSFSVDGS 126
EI L +++ +SG V+ + V+RS+ + K+ YGPYG + G PF+FSV+G
Sbjct: 74 EIKLQYPEEYLTGVSGYYCPMVNSGTPVIRSMTFKSNKQVYGPYG-VEQGTPFTFSVNGG 132
Query: 127 DRITGFFVRAGFITDAIGVYV 147
RI G R+G+ D+IG ++
Sbjct: 133 -RIVGMNGRSGWYLDSIGFHL 152
>AT1G19715.3 | chr1:6816934-6819432 REVERSE LENGTH=602
Length = 601
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 16/150 (10%)
Query: 8 FGPWGGPGGD-YRDVQVAPYRLVRLTIRSGDTVDGISFTYIGNDGLVYHMGHWGSD---- 62
+GPWGG GG + D R + L+ G + + + G WGS
Sbjct: 243 YGPWGGTGGIMFDDGIYTGIRQINLSRNVGIVSMKVCYDFRG-------QAVWGSKHGGV 295
Query: 63 GGVPHE--IHLGLMDFVMEISGTTGMWVSGMSNVLRSLKITTLKRTYGPYGNPKAGIPFS 120
GG H+ + + + ++GT G + NV++SL T + +GPYG + G F+
Sbjct: 296 GGFKHDKIVFDYPSEVLTHVTGTYGPLMYMGPNVIKSLTFRTNRGKHGPYGEEQ-GPSFT 354
Query: 121 FSVDGSDRITGFFVRAGFITDAIGVYVRHC 150
+D ++ GF R G D+IGV+V C
Sbjct: 355 HQMD-EGKVVGFLGREGLFLDSIGVHVMEC 383
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 55/122 (45%), Gaps = 5/122 (4%)
Query: 31 LTIRSGDTVDGISFTYIGNDGLVYHMGHWGSDGGVP-HEIHLGLMD-FVMEISGTTG-MW 87
R D + I Y N V+ + H G GV H I D + ISG G +
Sbjct: 464 FVTRGNDAITSIQIEYDRNGQSVWSIKHGGDSNGVATHRIKFEYPDESITCISGYYGPLN 523
Query: 88 VSGMSNVLRSLKITTLKRTYGPYGNPKAGIPFSFSVDGSDRITGFFVRAGFITDAIGVYV 147
S NV++SL T + YGPYG S + G ++ GF R+ F DAIGV++
Sbjct: 524 NSDRYNVVKSLSFYTSRGRYGPYGEETGTFFTSTTTQG--KVLGFHGRSSFHLDAIGVHM 581
Query: 148 RH 149
+H
Sbjct: 582 QH 583
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.144 0.464
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,464,648
Number of extensions: 144247
Number of successful extensions: 335
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 334
Number of HSP's successfully gapped: 4
Length of query: 150
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 60
Effective length of database: 8,639,129
Effective search space: 518347740
Effective search space used: 518347740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 107 (45.8 bits)