Os04g0276600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0276600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.29 | 0.267 | 9.12 | -0.13 | 0.45 | -0.328 | 0.395 | 0.436 | -0.157 | 14.2 | 20.67 | 5958 | -- | -- |
| 32.37 | 0.265 | 9.13 | -0.259 | 0.434 | -0.303 | 0.379 | -- | -0.177 | 14.1 | 20.8 | 7180 | -- | -- |
| 32.76 | 0.267 | 9.11 | -0.0731 | 0.465 | -0.308 | -- | 0.655 | -0.153 | 14.7 | 22.99 | 6091 | -- | -- |
| 32.9 | 0.267 | 9.13 | -0.252 | 0.439 | -0.304 | -- | -- | -0.176 | 14.4 | 20.87 | 7122 | -- | -- |
| 43.92 | 0.309 | 9.12 | -0.129 | -- | -0.362 | -- | 0.421 | -0.139 | -- | 23.69 | 6935 | -- | -- |
| 35.46 | 0.279 | 9.16 | -0.42 | 0.456 | -- | 0.425 | -- | -0.279 | 14.2 | -- | -- | -- | -- |
| 36.09 | 0.281 | 9.16 | -0.407 | 0.46 | -- | -- | -- | -0.276 | 14.4 | -- | -- | -- | -- |
| 44.05 | 0.309 | 9.13 | -0.235 | -- | -0.372 | -- | -- | -0.167 | -- | 20.7 | 6893 | -- | -- |
| 33.47 | 0.269 | 9.11 | -- | 0.442 | -0.418 | -- | -- | -0.074 | 14.5 | 20.1 | 39660 | -- | -- |
| 48.6 | 0.326 | 9.16 | -0.427 | -- | -- | -- | -- | -0.287 | -- | -- | -- | -- | -- |
| 40.46 | 0.298 | 9.15 | -- | 0.468 | -- | -- | -- | -0.23 | 14.4 | -- | -- | -- | -- |
| 44.89 | 0.312 | 9.12 | -- | -- | -0.504 | -- | -- | -0.116 | -- | 17.9 | 6888 | -- | -- |
| 53.41 | 0.341 | 9.15 | -- | -- | -- | -- | -- | -0.24 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.14 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 13 |
| 2 | 31.15 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 9 |
| 3 | 31.19 | radiation | 1 | 14400 | < th | dose dependent | rect. | 15 | 2 |
| 12 | 31.26 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 7 |
| 21 | 31.36 | radiation | 1 | 14400 | < th | dose independent | rect. | 12 | 5 |
| 23 | 31.37 | radiation | 1 | 14400 | > th | dose independent | rect. | 12 | 5 |
| 29 | 31.39 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 36 | 31.42 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 11 |
| 40 | 31.43 | temperature | 10 | 720 | > th | dose dependent | sin | 10 | NA |
| 44 | 31.44 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 61 | 31.49 | radiation | 1 | 14400 | < th | dose independent | rect. | 20 | 10 |
| 63 | 31.49 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 65 | 31.49 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 6 |
| 66 | 31.50 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 74 | 31.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 75 | 31.51 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 76 | 31.51 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 94 | 31.53 | radiation | 1 | 14400 | > th | dose independent | rect. | 6 | 11 |
| 96 | 31.54 | radiation | 1 | 14400 | < th | dose independent | rect. | 6 | 11 |
| 128 | 31.57 | radiation | 1 | 14400 | > th | dose independent | rect. | 12 | 19 |
| 140 | 31.60 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 23 |
| 143 | 31.61 | radiation | 1 | 14400 | < th | dose independent | rect. | 12 | 19 |
| 144 | 31.61 | wind | 1 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 154 | 31.62 | temperature | 20 | 43200 | < th | dose dependent | rect. | 16 | 7 |
| 163 | 31.63 | temperature | 20 | 43200 | < th | dose dependent | rect. | 17 | 5 |
| 180 | 31.64 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 23 |
| 182 | 31.64 | temperature | 20 | 43200 | < th | dose dependent | sin | 18 | NA |
| 199 | 31.64 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 13 |
| 204 | 31.64 | radiation | 1 | 14400 | < th | dose dependent | rect. | 12 | 19 |
| 265 | 31.65 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 23 |
| 301 | 31.67 | temperature | 20 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 335 | 31.68 | temperature | 20 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 362 | 31.68 | temperature | 20 | 43200 | < th | dose dependent | rect. | 5 | 17 |
| 372 | 31.69 | humidity | 90 | 43200 | > th | dose independent | rect. | 14 | 5 |
| 423 | 31.70 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 454 | 31.71 | humidity | 80 | 43200 | < th | dose independent | rect. | 5 | 12 |
| 469 | 31.71 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 473 | 31.71 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 2 |
| 503 | 31.72 | humidity | 90 | 43200 | < th | dose independent | rect. | 14 | 5 |
| 510 | 31.72 | radiation | 1 | 14400 | < th | dose dependent | sin | 17 | NA |
| 520 | 31.72 | wind | 1 | 14400 | < th | dose dependent | rect. | 22 | 9 |
| 601 | 31.73 | temperature | 20 | 43200 | < th | dose dependent | rect. | 12 | 21 |
| 624 | 31.74 | temperature | 20 | 43200 | < th | dose dependent | no | NA | NA |
| 635 | 31.74 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 13 |
| 672 | 31.74 | temperature | 20 | 43200 | < th | dose dependent | rect. | 19 | 23 |
| 677 | 31.75 | humidity | 90 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 679 | 31.75 | temperature | 20 | 43200 | < th | dose independent | rect. | 14 | 3 |
| 680 | 31.75 | humidity | 90 | 43200 | > th | dose independent | rect. | 16 | 3 |
| 706 | 31.75 | wind | 1 | 14400 | < th | dose dependent | rect. | 20 | 11 |
| 740 | 31.76 | temperature | 20 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 742 | 31.76 | temperature | 20 | 43200 | > th | dose independent | rect. | 14 | 3 |
| 769 | 31.76 | temperature | 20 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 820 | 31.77 | radiation | 1 | 14400 | > th | dose independent | sin | 14 | NA |
| 822 | 31.77 | radiation | 40 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 824 | 31.77 | humidity | 90 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 884 | 31.77 | radiation | 40 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 934 | 31.77 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 17 |
| 953 | 31.78 | temperature | 20 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 970 | 31.78 | humidity | 80 | 43200 | > th | dose independent | rect. | 5 | 12 |
| 991 | 31.78 | radiation | 1 | 14400 | < th | dose dependent | no | NA | NA |