BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0276600 Os04g0276600|AK068009
(237 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G34215.1 | chr4:16380203-16381192 REVERSE LENGTH=261 271 3e-73
AT3G53010.1 | chr3:19656603-19657928 REVERSE LENGTH=298 229 6e-61
>AT4G34215.1 | chr4:16380203-16381192 REVERSE LENGTH=261
Length = 260
Score = 271 bits (692), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 140/238 (58%), Positives = 168/238 (70%), Gaps = 8/238 (3%)
Query: 2 RIFVLSGQSNMAGRGGV---HHRR---WDGVVPPECAPCPSVLRLTAALDWVEAREPLHA 55
+IF+LSGQSNMAGRGGV HH WD ++PPECAP S+LRL+A L W EA EPLH
Sbjct: 23 QIFILSGQSNMAGRGGVFKDHHNNRWVWDKILPPECAPNSSILRLSADLRWEEAHEPLHV 82
Query: 56 DIDTAKTCGVGPGMAFARAVLPRLDPPGSGVGLVPCAVGGTAIREWARGERLYDQMVRRA 115
DIDT K CGVGPGMAFA AV RL+ + +GLVPCA GGTAI+EW RG LY++MV+R
Sbjct: 83 DIDTGKVCGVGPGMAFANAVKNRLETDSAVIGLVPCASGGTAIKEWERGSHLYERMVKRT 142
Query: 116 RAAAEC-GEIEAVQWYQGXXXXXXXXXXXXXXGNLETLIANVREDLGMPQLPFIQVALAS 174
+ +C GEI+AV WYQG N++ LI N+R DL +P LP IQVA+AS
Sbjct: 143 EESRKCGGEIKAVLWYQGESDVLDIHDAESYGNNMDRLIKNLRHDLNLPSLPIIQVAIAS 202
Query: 175 GNKKNIEKVRKAQLGINLPNVVTVDAFGLSLNEDHLHLTTESQVKLGEMLAQVYMSNF 232
G I+KVR+AQLG+ L NVV VDA GL L D+LHLTTE+QV+LG LAQ Y+SNF
Sbjct: 203 GGGY-IDKVREAQLGLKLSNVVCVDAKGLPLKSDNLHLTTEAQVQLGLSLAQAYLSNF 259
>AT3G53010.1 | chr3:19656603-19657928 REVERSE LENGTH=298
Length = 297
Score = 229 bits (585), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 119/239 (49%), Positives = 152/239 (63%), Gaps = 13/239 (5%)
Query: 1 MRIFVLSGQSNMAGRGGVHHRR------WDGVVPPECAPCPSVLRLTAALDWVEAREPLH 54
+ IF+L+GQSNMAGRGGV++ WDGV+PPEC PS+LRLT+ L+W EA+EPLH
Sbjct: 29 ISIFILAGQSNMAGRGGVYNDTATNTTVWDGVIPPECRSNPSILRLTSKLEWKEAKEPLH 88
Query: 55 ADIDTAKTCGVGPGMAFARAVLPRLDPPGSGVGLVPCAVGGTAIREWARGERLYDQMVRR 114
DID KT GVGPGM FA V+ R VGLVPC++GGT + +W +GE LY++ V+R
Sbjct: 89 VDIDINKTNGVGPGMPFANRVVNRF----GQVGLVPCSIGGTKLSQWQKGEFLYEETVKR 144
Query: 115 ARAAAEC---GEIEAVQWYQGXXXXXXXXXXXXXXGNLETLIANVREDLGMPQLPFIQVA 171
A+AA G AV WYQG L +++R DL P LP IQVA
Sbjct: 145 AKAAMASGGGGSYRAVLWYQGESDTVDMVDASVYKKRLVKFFSDLRNDLQHPNLPIIQVA 204
Query: 172 LASGNKKNIEKVRKAQLGINLPNVVTVDAFGLSLNEDHLHLTTESQVKLGEMLAQVYMS 230
LA+G ++ VRKAQL +L NV VDA GL L D LHLTT SQV+LG M+A+ +++
Sbjct: 205 LATGAGPYLDAVRKAQLKTDLENVYCVDARGLPLEPDGLHLTTSSQVQLGHMIAESFLA 263
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.137 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,811,249
Number of extensions: 183247
Number of successful extensions: 386
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 379
Number of HSP's successfully gapped: 2
Length of query: 237
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 141
Effective length of database: 8,474,633
Effective search space: 1194923253
Effective search space used: 1194923253
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)