Os04g0250700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0250700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76.99 | 0.412 | 11.4 | 0.143 | 0.482 | 1.5 | -0.22 | -2.44 | -0.418 | 22.5 | 25.6 | 202 | -- | -- |
| 78.64 | 0.413 | 11.4 | 0.423 | 0.477 | 1.25 | -0.149 | -- | -0.356 | 22.1 | 25.5 | 204 | -- | -- |
| 77.15 | 0.409 | 11.4 | 0.161 | 0.492 | 1.49 | -- | -2.45 | -0.408 | 22.3 | 25.7 | 195 | -- | -- |
| 78.74 | 0.413 | 11.4 | 0.43 | 0.477 | 1.25 | -- | -- | -0.356 | 22.1 | 25.47 | 204 | -- | -- |
| 85.1 | 0.43 | 11.4 | 0.14 | -- | 1.46 | -- | -2.01 | -0.445 | -- | 25.27 | 440 | -- | -- |
| 104.13 | 0.478 | 11.4 | 0.637 | 0.751 | -- | 0.343 | -- | -0.286 | 19.1 | -- | -- | -- | -- |
| 104.44 | 0.479 | 11.4 | 0.63 | 0.751 | -- | -- | -- | -0.285 | 19.1 | -- | -- | -- | -- |
| 85.8 | 0.431 | 11.4 | 0.409 | -- | 1.29 | -- | -- | -0.376 | -- | 25.2 | 441 | -- | -- |
| 83.47 | 0.426 | 11.4 | -- | 0.479 | 1.32 | -- | -- | -0.403 | 22.4 | 25.4 | 211 | -- | -- |
| 134.18 | 0.541 | 11.4 | 0.615 | -- | -- | -- | -- | -0.298 | -- | -- | -- | -- | -- |
| 114.88 | 0.501 | 11.4 | -- | 0.744 | -- | -- | -- | -0.355 | 19.2 | -- | -- | -- | -- |
| 90.02 | 0.442 | 11.4 | -- | -- | 1.36 | -- | -- | -0.432 | -- | 25.1 | 443 | -- | -- |
| 144.17 | 0.56 | 11.4 | -- | -- | -- | -- | -- | -0.367 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 75.65 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 12 |
| 2 | 75.77 | temperature | 25 | 720 | > th | dose dependent | rect. | 10 | 1 |
| 4 | 76.14 | temperature | 25 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 9 | 76.62 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 20 |
| 17 | 76.90 | temperature | 25 | 270 | > th | dose dependent | sin | 0 | NA |
| 28 | 77.18 | temperature | 25 | 90 | > th | dose dependent | rect. | 23 | 22 |
| 58 | 77.43 | temperature | 25 | 90 | > th | dose dependent | sin | 21 | NA |
| 69 | 77.50 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 148 | 77.95 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 317 | 79.84 | temperature | 25 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 414 | 81.00 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 5 |
| 541 | 81.76 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 3 |
| 544 | 81.77 | temperature | 25 | 720 | > th | dose dependent | rect. | 2 | 9 |
| 715 | 82.89 | humidity | 70 | 1440 | > th | dose independent | rect. | 10 | 9 |
| 759 | 83.17 | humidity | 70 | 1440 | < th | dose independent | rect. | 10 | 8 |
| 769 | 83.22 | humidity | 70 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 782 | 83.30 | humidity | 70 | 1440 | > th | dose independent | rect. | 13 | 5 |
| 787 | 83.32 | humidity | 70 | 1440 | < th | dose independent | rect. | 13 | 5 |
| 791 | 83.36 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 7 |
| 794 | 83.39 | humidity | 70 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 815 | 83.52 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 4 |
| 831 | 83.61 | humidity | 70 | 1440 | > th | dose independent | rect. | 5 | 14 |
| 832 | 83.61 | humidity | 70 | 1440 | > th | dose independent | rect. | 3 | 16 |
| 833 | 83.61 | humidity | 70 | 1440 | > th | dose independent | rect. | 23 | 20 |
| 851 | 83.67 | humidity | 70 | 1440 | > th | dose independent | sin | 21 | NA |
| 867 | 83.74 | humidity | 70 | 1440 | > th | dose independent | rect. | 10 | 14 |
| 872 | 83.74 | humidity | 70 | 1440 | > th | dose independent | rect. | 10 | 20 |
| 896 | 83.79 | humidity | 50 | 14400 | > th | dose dependent | rect. | 15 | 3 |
| 897 | 83.81 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 901 | 83.81 | humidity | 90 | 14400 | < th | dose dependent | rect. | 15 | 3 |
| 902 | 83.81 | humidity | 50 | 14400 | > th | dose dependent | rect. | 13 | 6 |
| 920 | 83.85 | humidity | 90 | 14400 | < th | dose dependent | rect. | 13 | 6 |
| 954 | 83.95 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 971 | 83.98 | humidity | 70 | 14400 | > th | dose independent | rect. | 17 | 15 |