BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0250700 Os04g0250700|AK066975
         (276 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G24175.1  | chr4:12547018-12548810 FORWARD LENGTH=307          186   1e-47

>AT4G24175.1 | chr4:12547018-12548810 FORWARD LENGTH=307
          Length = 306

 Score =  186 bits (472), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 107/212 (50%), Positives = 147/212 (69%), Gaps = 9/212 (4%)

Query: 71  KSRNDLKREARRAVQWGMDLAKFSPLQIKRILRAASLDREVFDALMLVKRFGSDVREGKR 130
           +SRN  KR+ARRAV+WGM+LA FS  Q+K+IL+AASL  EV+DALML KR GSDVREGKR
Sbjct: 87  RSRNQRKRDARRAVKWGMELASFSGDQVKQILKAASLGEEVYDALMLAKRLGSDVREGKR 146

Query: 131 RQFNYIGRLLRGAQPELMDTLIQYSKDGDDNRLLALMSE------NTFLMEDEEIEDLPC 184
           R FNYIG+LLR  +P+LMDTLI  +K GD + L  L+S       +     D++ E    
Sbjct: 147 RHFNYIGKLLREVEPDLMDTLINATKQGDHSTLQTLISSAKDVADDVGDSYDDDTETESE 206

Query: 185 NEEEGDKEHIEIADRWFEGLLSKDISVTNEIYAIHNVEFDRQELRKLVRTVHMVQD---N 241
           +EEEG  E+  +A RWF+GL+S+++ +T E+Y++ +V+FDRQELRKLVR V +V +    
Sbjct: 207 DEEEGSDEYTAMAARWFDGLISQNVELTKEVYSLQSVDFDRQELRKLVRKVQLVHEQRKG 266

Query: 242 IENEHEEESTMKLLGAKKQLLCFLRSIAKEAY 273
              E ++E    L+ A+K L  FL S+AK+ +
Sbjct: 267 TTEEKQKEVEAALVTAEKSLNQFLCSMAKQVH 298



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.136    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,323,239
Number of extensions: 186299
Number of successful extensions: 694
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 692
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 179
Effective length of database: 8,447,217
Effective search space: 1512051843
Effective search space used: 1512051843
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)