Os04g0227100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0227100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.8 | 0.289 | 10.3 | -0.463 | 0.333 | -0.699 | 0.16 | 1.81 | -0.0161 | 22.9 | 20.4 | 1326 | -- | -- |
| 40.29 | 0.296 | 10.3 | -0.726 | 0.305 | -0.813 | 0.367 | -- | -0.0024 | 23.3 | 15.42 | 9947 | -- | -- |
| 37.85 | 0.287 | 10.3 | -0.421 | 0.318 | -0.706 | -- | 2.02 | -0.00963 | 22.8 | 21.21 | 1330 | -- | -- |
| 40.1 | 0.295 | 10.3 | -0.732 | 0.306 | -0.828 | -- | -- | -0.0413 | 22.6 | 10.3 | 10042 | -- | -- |
| 43.71 | 0.308 | 10.3 | -0.439 | -- | -0.671 | -- | 1.84 | -0.00331 | -- | 21.34 | 1527 | -- | -- |
| 51.33 | 0.336 | 10.4 | -1.21 | 0.289 | -- | 0.187 | -- | -0.302 | 22.4 | -- | -- | -- | -- |
| 51.46 | 0.336 | 10.4 | -1.21 | 0.289 | -- | -- | -- | -0.302 | 22.2 | -- | -- | -- | -- |
| 45.29 | 0.315 | 10.3 | -1.08 | -- | -0.68 | -- | -- | -0.194 | -- | 21.34 | 1527 | -- | -- |
| 45.32 | 0.314 | 10.3 | -- | 0.31 | -1.11 | -- | -- | 0.151 | 22.5 | 8.976 | 41508 | -- | -- |
| 56.53 | 0.351 | 10.4 | -1.21 | -- | -- | -- | -- | -0.301 | -- | -- | -- | -- | -- |
| 90.21 | 0.444 | 10.3 | -- | 0.284 | -- | -- | -- | -0.167 | 21.9 | -- | -- | -- | -- |
| 51.01 | 0.333 | 10.3 | -- | -- | -1.1 | -- | -- | 0.151 | -- | 7.708 | 41867 | -- | -- |
| 95.05 | 0.455 | 10.3 | -- | -- | -- | -- | -- | -0.167 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.64 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 16 |
| 4 | 37.66 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 4 |
| 9 | 37.69 | temperature | 20 | 1440 | > th | dose dependent | sin | 11 | NA |
| 11 | 37.69 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 19 |
| 18 | 37.71 | temperature | 20 | 1440 | > th | dose dependent | sin | 8 | NA |
| 56 | 37.80 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 2 |
| 135 | 37.96 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 153 | 37.98 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 7 |
| 162 | 37.99 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 186 | 38.02 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 23 |
| 277 | 38.19 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 309 | 38.27 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 340 | 38.32 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 366 | 38.39 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 367 | 38.39 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 16 |
| 410 | 38.42 | temperature | 25 | 1440 | > th | dose dependent | rect. | 9 | 13 |
| 466 | 38.45 | temperature | 25 | 1440 | > th | dose dependent | sin | 22 | NA |
| 525 | 38.49 | wind | 3 | 43200 | > th | dose dependent | rect. | 8 | 8 |
| 529 | 38.49 | wind | 3 | 43200 | > th | dose dependent | rect. | 5 | 12 |
| 542 | 38.51 | wind | 3 | 43200 | > th | dose dependent | rect. | 9 | 6 |
| 544 | 38.51 | wind | 9 | 43200 | < th | dose dependent | rect. | 8 | 7 |
| 570 | 38.54 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 12 |
| 599 | 38.57 | humidity | 80 | 43200 | < th | dose dependent | rect. | 21 | 2 |
| 606 | 38.58 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 12 |
| 627 | 38.62 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 657 | 38.65 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 675 | 38.67 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 676 | 38.67 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 7 |
| 694 | 38.68 | wind | 3 | 43200 | > th | dose dependent | sin | 1 | NA |
| 704 | 38.69 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 719 | 38.71 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 724 | 38.72 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 730 | 38.72 | temperature | 20 | 10 | > th | dose dependent | rect. | 24 | 23 |
| 731 | 38.73 | wind | 1 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 736 | 38.74 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 764 | 38.76 | wind | 5 | 43200 | < th | dose independent | sin | 0 | NA |
| 765 | 38.76 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 787 | 38.78 | wind | 5 | 43200 | > th | dose independent | sin | 0 | NA |
| 788 | 38.78 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 4 |
| 804 | 38.79 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 9 |
| 811 | 38.79 | temperature | 20 | 30 | > th | dose dependent | rect. | 4 | 17 |
| 816 | 38.80 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 8 |
| 837 | 38.82 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 854 | 38.83 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 7 |
| 856 | 38.83 | temperature | 25 | 4320 | > th | dose independent | rect. | 4 | 10 |
| 857 | 38.83 | temperature | 25 | 4320 | < th | dose independent | rect. | 4 | 14 |
| 858 | 38.83 | temperature | 25 | 4320 | > th | dose independent | rect. | 3 | 15 |
| 867 | 38.83 | wind | 3 | 43200 | > th | dose dependent | rect. | 5 | 17 |
| 868 | 38.84 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 887 | 38.84 | wind | 3 | 43200 | > th | dose dependent | rect. | 3 | 19 |
| 913 | 38.86 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 17 |
| 939 | 38.88 | temperature | 25 | 4320 | > th | dose independent | sin | 3 | NA |
| 962 | 38.89 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 4 |
| 963 | 38.89 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 6 |
| 964 | 38.89 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 7 |
| 985 | 38.90 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |