Os04g0224600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Phosphoglycerate mutase domain containing protein.
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Os04g0224600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Phosphoglycerate mutase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.14 | 0.339 | 10.5 | -0.959 | 0.712 | -1.08 | 0.3 | -1.78 | -0.133 | 13.6 | 20.31 | 8 | -- | -- |
| 51.86 | 0.338 | 10.5 | -0.677 | 0.755 | -1.22 | -0.18 | -- | -0.077 | 13.8 | 23.46 | 3 | -- | -- |
| 51.38 | 0.336 | 10.5 | -0.831 | 0.736 | -1.13 | -- | -1.07 | -0.115 | 13.8 | 23.01 | 7 | -- | -- |
| 51.98 | 0.338 | 10.5 | -0.681 | 0.759 | -1.23 | -- | -- | -0.0766 | 13.8 | 23.46 | 3 | -- | -- |
| 57.59 | 0.353 | 10.6 | -0.972 | -- | -0.885 | -- | -1.58 | -0.19 | -- | 18.07 | 2334 | -- | -- |
| 74.48 | 0.405 | 10.6 | -0.879 | 0.312 | -- | -0.401 | -- | -0.24 | 12.6 | -- | -- | -- | -- |
| 75.15 | 0.406 | 10.6 | -0.895 | 0.313 | -- | -- | -- | -0.243 | 12.4 | -- | -- | -- | -- |
| 59.11 | 0.358 | 10.5 | -0.552 | -- | -0.913 | -- | -- | -0.0476 | -- | 19.63 | 2385 | -- | -- |
| 63.37 | 0.373 | 10.5 | -- | 0.837 | -1.42 | -- | -- | 0.0362 | 13.9 | 22.88 | 10 | -- | -- |
| 81.31 | 0.421 | 10.6 | -0.905 | -- | -- | -- | -- | -0.248 | -- | -- | -- | -- | -- |
| 96.24 | 0.459 | 10.5 | -- | 0.326 | -- | -- | -- | -0.143 | 12.5 | -- | -- | -- | -- |
| 63.93 | 0.372 | 10.5 | -- | -- | -1.08 | -- | -- | 0.179 | -- | 18.58 | 9571 | -- | -- |
| 102.92 | 0.474 | 10.5 | -- | -- | -- | -- | -- | -0.147 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.91 | temperature | 20 | 270 | > th | dose dependent | sin | 5 | NA |
| 4 | 47.11 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 13 |
| 5 | 47.14 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 11 |
| 16 | 47.46 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 20 | 47.64 | temperature | 15 | 90 | > th | dose dependent | sin | 2 | NA |
| 24 | 47.68 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 5 |
| 26 | 47.74 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 54 | 48.21 | temperature | 15 | 10 | > th | dose dependent | sin | 1 | NA |
| 144 | 49.31 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 146 | 49.34 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 10 |
| 179 | 49.78 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 180 | 49.79 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 6 |
| 193 | 49.93 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 242 | 50.36 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 16 |
| 318 | 51.11 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 349 | 51.32 | temperature | 25 | 720 | > th | dose independent | rect. | 5 | 7 |
| 368 | 51.47 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 378 | 51.50 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 381 | 51.52 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 2 |
| 404 | 51.63 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 16 |
| 500 | 52.05 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 17 |
| 511 | 52.08 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 518 | 52.09 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 600 | 52.28 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 640 | 52.35 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 20 |
| 719 | 52.50 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 728 | 52.51 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 858 | 52.67 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |