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Os04g0218400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Origin recognition complex subunit 4.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.75 (0.0306) R2 : 0.619
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.94 (0.0727) R2dC : 0.599 R2C : 0.588
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.344 (0.0643) R2dN8 : 0.0309 R2N8 : 0.0197
σ : 0.577
deviance : 151.92
__
_____
C
peak time of C : 23.9
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
131.23 0.538 9.7 0.143 1.71 0.806 -0.341 0.454 -0.158 23.1 88.01 40 -- --
131.69 0.534 9.71 0.17 1.71 0.826 -0.172 -- -0.151 23.1 88.27 40 -- --
131.62 0.534 9.7 0.167 1.71 0.798 -- 0.268 -0.157 23.1 88.07 40 -- --
131.81 0.535 9.71 0.179 1.72 0.817 -- -- -0.153 23.1 88.32 40 -- --
263.18 0.76 9.67 0.232 -- 1.36 -- 0.752 -0.158 -- 73.13 7 -- --
149.71 0.574 9.74 0.288 1.94 -- 0.182 -- -0.312 23.9 -- -- -- --
149.85 0.573 9.74 0.28 1.94 -- -- -- -0.313 23.9 -- -- -- --
265.37 0.762 9.67 0.266 -- 1.38 -- -- -0.15 -- 73 2 -- --
132.64 0.536 9.71 -- 1.72 0.839 -- -- -0.168 23.1 88.37 40 -- --
387.12 0.919 9.7 0.339 -- -- -- -- -0.287 -- -- -- -- --
151.92 0.577 9.75 -- 1.94 -- -- -- -0.344 23.9 -- -- -- --
267.23 0.764 9.67 -- -- 1.39 -- -- -0.179 -- 73 2 -- --
390.15 0.922 9.71 -- -- -- -- -- -0.325 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 116.89 humidity 70.0 30 > th dose dependent rect. 2 4
9 117.85 humidity 80.0 30 > th dose independent rect. 2 4
12 118.06 precipitation 0.1 30 < th dose independent rect. 6 20
13 118.06 precipitation 0.1 30 < th dose dependent rect. 6 20
24 118.71 wind 9.0 30 < th dose independent rect. 6 20
25 118.83 wind 9.0 1440 < th dose independent rect. 3 4
26 118.83 temperature 10.0 1440 > th dose independent rect. 3 4
29 118.83 temperature 30.0 1440 < th dose independent rect. 3 4
33 118.83 humidity 50.0 1440 > th dose independent rect. 3 4
38 118.83 atmosphere 995.0 1440 > th dose independent rect. 3 4
39 118.83 radiation 40.0 1440 < th dose independent rect. 3 4
43 118.83 temperature 10.0 1440 > th dose independent rect. 7 20
48 118.87 wind 9.0 30 < th dose independent rect. 2 4
49 118.87 temperature 10.0 30 > th dose independent rect. 2 4
51 118.87 temperature 30.0 30 < th dose independent rect. 2 4
52 118.87 humidity 50.0 30 > th dose independent rect. 2 4
55 118.87 atmosphere 995.0 30 > th dose independent rect. 2 4
56 118.87 atmosphere 1010.0 30 < th dose independent rect. 2 4
58 118.87 radiation 20.0 30 < th dose independent rect. 2 4
61 118.87 temperature 10.0 30 > th dose independent rect. 6 20
114 119.52 radiation 40.0 30 < th dose dependent rect. 2 4
116 119.61 precipitation 0.1 30 < th dose independent rect. 2 4
117 119.61 precipitation 0.1 30 < th dose dependent rect. 2 4
149 120.35 atmosphere 1015.0 1440 < th dose independent rect. 4 3
162 120.40 radiation 1.0 90 > th dose independent sin 3 NA
163 120.45 atmosphere 1015.0 30 < th dose independent rect. 6 20
166 120.55 wind 9.0 30 < th dose dependent rect. 2 4
173 120.71 temperature 10.0 30 > th dose dependent rect. 2 4
175 120.73 atmosphere 1015.0 10 < th dose dependent rect. 2 4
188 120.97 atmosphere 995.0 30 > th dose independent rect. 6 20
189 120.98 wind 9.0 30 < th dose dependent rect. 6 20
202 121.23 radiation 1.0 90 < th dose independent sin 3 NA
232 121.70 humidity 80.0 10 > th dose dependent rect. 2 6
262 121.99 radiation 1.0 90 < th dose independent rect. 3 14
267 122.12 radiation 1.0 90 < th dose dependent sin 2 NA
286 122.45 radiation 40.0 30 < th dose dependent rect. 14 16
290 122.68 precipitation 0.1 270 < th dose independent rect. 3 22
291 122.68 precipitation 0.1 270 < th dose dependent rect. 3 22
329 123.19 radiation 1.0 90 < th dose independent rect. 2 17
350 123.41 wind 9.0 30 < th dose dependent rect. 6 10
358 123.51 temperature 30.0 30 < th dose dependent rect. 2 4
365 123.59 precipitation 0.1 10 < th dose independent rect. 6 8
366 123.59 precipitation 0.1 10 < th dose dependent rect. 6 8
367 123.60 radiation 1.0 30 > th dose independent rect. 6 10
375 123.62 precipitation 0.1 10 < th dose independent rect. 6 10
376 123.62 radiation 40.0 30 < th dose independent rect. 14 16
377 123.62 precipitation 0.1 10 < th dose dependent rect. 6 10
378 123.64 temperature 10.0 10 > th dose independent rect. 6 8
380 123.64 atmosphere 995.0 10 > th dose independent rect. 6 8
381 123.64 atmosphere 1015.0 10 < th dose independent rect. 6 8
382 123.64 temperature 10.0 10 > th dose independent rect. 14 16
388 123.70 temperature 10.0 10 > th dose independent rect. 6 10
390 123.70 atmosphere 1015.0 10 < th dose independent rect. 6 10
391 123.70 temperature 10.0 10 > th dose independent rect. 16 14
392 123.70 radiation 40.0 10 < th dose independent rect. 16 14
411 123.72 atmosphere 995.0 10 > th dose dependent rect. 3 3
426 123.79 radiation 1.0 90 < th dose dependent rect. 3 14
431 123.82 radiation 1.0 90 < th dose dependent rect. 3 16
436 123.86 temperature 10.0 1440 > th dose independent rect. 7 8
440 123.86 temperature 10.0 1440 > th dose independent rect. 15 16
448 123.92 radiation 1.0 30 > th dose independent rect. 6 8
458 124.02 atmosphere 995.0 10 > th dose independent rect. 6 10
465 124.08 wind 9.0 30 < th dose independent rect. 6 8
476 124.14 wind 9.0 270 < th dose independent rect. 4 21
484 124.17 atmosphere 1015.0 270 < th dose dependent rect. 2 1
486 124.19 wind 9.0 30 < th dose independent rect. 14 16
490 124.21 wind 9.0 30 < th dose independent rect. 6 10
492 124.23 atmosphere 995.0 10 > th dose independent rect. 16 14
501 124.25 atmosphere 995.0 10 > th dose independent rect. 14 16
514 124.29 wind 1.0 30 > th dose independent rect. 6 21
526 124.35 humidity 50.0 30 > th dose independent rect. 14 16
534 124.41 wind 9.0 10 < th dose independent rect. 16 14
577 124.66 temperature 10.0 270 > th dose independent rect. 4 21
640 124.87 humidity 90.0 30 > th dose dependent rect. 2 20
643 124.88 humidity 90.0 30 > th dose dependent rect. 2 16
647 124.90 wind 9.0 30 < th dose dependent rect. 6 8
657 125.01 humidity 50.0 10 > th dose dependent rect. 16 14
667 125.06 wind 9.0 270 < th dose independent rect. 2 1
668 125.06 temperature 10.0 270 > th dose independent rect. 2 1
670 125.06 temperature 30.0 270 < th dose independent rect. 2 1
671 125.06 humidity 50.0 270 > th dose independent rect. 2 1
674 125.06 atmosphere 995.0 270 > th dose independent rect. 2 1
675 125.06 atmosphere 1010.0 270 < th dose independent rect. 2 1
677 125.06 radiation 1.0 270 < th dose independent rect. 2 1
682 125.06 precipitation 0.1 270 < th dose independent rect. 1 2
685 125.06 temperature 10.0 270 > th dose independent rect. 3 23
686 125.06 radiation 1.0 270 < th dose dependent rect. 2 1
691 125.06 precipitation 0.1 270 < th dose dependent rect. 1 2
719 125.11 humidity 50.0 10 > th dose independent rect. 16 14
728 125.16 humidity 90.0 30 > th dose dependent rect. 2 14
731 125.17 humidity 90.0 30 < th dose independent sin 5 NA
744 125.22 humidity 90.0 30 > th dose independent rect. 2 14
771 125.28 humidity 50.0 30 > th dose independent rect. 6 8
786 125.37 humidity 90.0 30 > th dose dependent sin 4 NA
825 125.51 wind 9.0 270 < th dose dependent rect. 2 1
850 125.61 wind 3.0 270 < th dose independent rect. 2 1
877 125.72 wind 1.0 10 > th dose independent rect. 6 8
911 125.81 precipitation 0.1 10 < th dose independent rect. 14 16
912 125.81 precipitation 0.1 10 < th dose dependent rect. 14 16