BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0218400 Os04g0218400|016-029-E03
         (65 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G01120.2  | chr2:85444-88027 FORWARD LENGTH=425                 81   8e-17

>AT2G01120.2 | chr2:85444-88027 FORWARD LENGTH=425
          Length = 424

 Score = 81.3 bits (199), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 37/49 (75%), Positives = 44/49 (89%)

Query: 14  IRLNGMLHSDDNCATKEIARQLCLEHQLSFSKMASSDDNTEFMIDMLRS 62
           IRLNG+LHSDDNCA KEIA+QLC+EH L FSKMAS DDN++F+I MLR+
Sbjct: 87  IRLNGLLHSDDNCAFKEIAKQLCMEHHLLFSKMASFDDNSQFIIAMLRA 135



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.327    0.134    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,302,682
Number of extensions: 37079
Number of successful extensions: 122
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 1
Length of query: 65
Length of database: 11,106,569
Length adjustment: 38
Effective length of query: 27
Effective length of database: 10,064,761
Effective search space: 271748547
Effective search space used: 271748547
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 104 (44.7 bits)