Os04g0192800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os04g0192800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 119.27 | 0.513 | 7.69 | -0.32 | 2.4 | 1.25 | 0.42 | -3.72 | -0.591 | 7.17 | 26.75 | 1328 | -- | -- |
| 129.74 | 0.531 | 7.59 | 0.635 | 2.43 | 1.03 | 0.253 | -- | -0.309 | 7.1 | 26.76 | 1353 | -- | -- |
| 119.57 | 0.509 | 7.7 | -0.275 | 2.4 | 1.27 | -- | -3.73 | -0.592 | 7.19 | 26.8 | 1291 | -- | -- |
| 129.08 | 0.529 | 7.56 | 0.761 | 2.4 | 0.964 | -- | -- | -0.265 | 7.2 | 26.77 | 1291 | -- | -- |
| 422.18 | 0.957 | 7.75 | -0.286 | -- | 1.32 | -- | -3.57 | -0.541 | -- | 27.1 | 1346 | -- | -- |
| 157.92 | 0.589 | 7.51 | 1.08 | 2.42 | -- | 0.448 | -- | -0.0354 | 7 | -- | -- | -- | -- |
| 158.43 | 0.589 | 7.51 | 1.08 | 2.43 | -- | -- | -- | -0.0367 | 6.98 | -- | -- | -- | -- |
| 428.55 | 0.964 | 7.62 | 0.757 | -- | 1.04 | -- | -- | -0.242 | -- | 27.14 | 1347 | -- | -- |
| 142.9 | 0.557 | 7.58 | -- | 2.4 | 1.12 | -- | -- | -0.383 | 7.18 | 26.7 | 1331 | -- | -- |
| 467.76 | 1.01 | 7.56 | 1.13 | -- | -- | -- | -- | 0.00813 | -- | -- | -- | -- | -- |
| 189.42 | 0.644 | 7.54 | -- | 2.44 | -- | -- | -- | -0.158 | 6.95 | -- | -- | -- | -- |
| 442.34 | 0.98 | 7.65 | -- | -- | 1.22 | -- | -- | -0.364 | -- | 27.2 | 1349 | -- | -- |
| 501.67 | 1.05 | 7.59 | -- | -- | -- | -- | -- | -0.118 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 109.46 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 16 | 114.15 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 3 |
| 20 | 114.35 | temperature | 15 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 142 | 117.60 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 143 | 117.63 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 18 |
| 176 | 118.17 | temperature | 25 | 1440 | > th | dose dependent | sin | 18 | NA |
| 367 | 120.10 | temperature | 10 | 720 | > th | dose dependent | sin | 16 | NA |
| 431 | 120.69 | temperature | 25 | 1440 | > th | dose independent | rect. | 13 | 10 |
| 455 | 120.89 | temperature | 10 | 1440 | > th | dose dependent | sin | 20 | NA |
| 526 | 121.26 | temperature | 25 | 1440 | < th | dose independent | rect. | 13 | 10 |
| 783 | 122.30 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 855 | 122.66 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 865 | 122.69 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 866 | 122.69 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 893 | 122.82 | temperature | 30 | 1440 | < th | dose dependent | sin | 20 | NA |