Os04g0167800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Chalcone reductase homologue (Fragment).
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Os04g0167800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Chalcone reductase homologue (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59.74 | 0.363 | 11.7 | 1.27 | 0.346 | -2.32 | 0.0758 | -3.64 | 0.807 | 5.73 | 1.08 | 4316 | -- | -- |
| 69.26 | 0.388 | 11.7 | 0.7 | 0.502 | -1.87 | 0.0143 | -- | 0.785 | 7.92 | 2.129 | 4230 | -- | -- |
| 59.76 | 0.36 | 11.7 | 1.27 | 0.346 | -2.32 | -- | -3.64 | 0.807 | 5.73 | 1.08 | 4315 | -- | -- |
| 67.95 | 0.384 | 11.7 | 0.693 | 0.347 | -1.62 | -- | -- | 0.74 | 5.64 | 2.236 | 4319 | -- | -- |
| 65.96 | 0.378 | 11.7 | 1.29 | -- | -2.27 | -- | -3.5 | 0.816 | -- | 1.286 | 4315 | -- | -- |
| 129.95 | 0.534 | 11.7 | 1.14 | 0.385 | -- | 0.241 | -- | 1.05 | 5.08 | -- | -- | -- | -- |
| 130.1 | 0.534 | 11.7 | 1.14 | 0.387 | -- | -- | -- | 1.05 | 5.16 | -- | -- | -- | -- |
| 74.24 | 0.401 | 11.7 | 0.682 | -- | -1.66 | -- | -- | 0.693 | -- | 2.264 | 4315 | -- | -- |
| 79.74 | 0.416 | 11.7 | -- | 0.356 | -1.86 | -- | -- | 0.724 | 5.44 | 1.713 | 4318 | -- | -- |
| 137.94 | 0.549 | 11.7 | 1.16 | -- | -- | -- | -- | 1.06 | -- | -- | -- | -- | -- |
| 164.55 | 0.6 | 11.7 | -- | 0.407 | -- | -- | -- | 0.918 | 5.06 | -- | -- | -- | -- |
| 84.89 | 0.429 | 11.8 | -- | -- | -1.89 | -- | -- | 0.59 | -- | 2.01 | 4302 | -- | -- |
| 173.25 | 0.614 | 11.7 | -- | -- | -- | -- | -- | 0.927 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 55.85 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 11 | 55.93 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 17 | 55.96 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 21 | 56.41 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 2 |
| 28 | 56.49 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 9 |
| 33 | 56.75 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 36 | 57.00 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 4 |
| 38 | 57.08 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 53 | 57.46 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 60 | 57.54 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 63 | 57.58 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 71 | 57.66 | radiation | 1 | 4320 | < th | dose dependent | rect. | 15 | 15 |
| 81 | 57.74 | radiation | 1 | 4320 | < th | dose dependent | rect. | 12 | 18 |
| 86 | 57.77 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 3 |
| 92 | 57.79 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 123 | 58.12 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 4 |
| 130 | 58.16 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 131 | 58.19 | radiation | 1 | 4320 | < th | dose dependent | rect. | 9 | 21 |
| 190 | 58.56 | radiation | 1 | 4320 | < th | dose dependent | sin | 13 | NA |
| 218 | 58.80 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 234 | 58.90 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 20 |
| 239 | 58.92 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 16 |
| 249 | 58.98 | radiation | 1 | 43200 | < th | dose dependent | sin | 14 | NA |
| 250 | 58.98 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 251 | 58.98 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 3 |
| 254 | 58.99 | radiation | 1 | 4320 | > th | dose independent | rect. | 12 | 18 |
| 257 | 59.01 | radiation | 1 | 4320 | > th | dose independent | rect. | 15 | 15 |
| 282 | 59.13 | radiation | 1 | 43200 | < th | dose dependent | rect. | 7 | 22 |
| 329 | 59.28 | radiation | 1 | 4320 | < th | dose dependent | rect. | 12 | 22 |
| 368 | 59.40 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 13 |
| 374 | 59.40 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 18 |
| 376 | 59.41 | radiation | 1 | 4320 | > th | dose independent | sin | 14 | NA |
| 400 | 59.46 | humidity | 80 | 43200 | < th | dose independent | rect. | 11 | 7 |
| 464 | 59.57 | radiation | 1 | 4320 | > th | dose independent | rect. | 9 | 21 |
| 498 | 59.65 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 3 |
| 564 | 59.74 | humidity | 80 | 43200 | > th | dose independent | rect. | 11 | 7 |
| 614 | 59.80 | radiation | 1 | 4320 | < th | dose dependent | rect. | 2 | 18 |
| 619 | 59.80 | radiation | 1 | 4320 | < th | dose dependent | rect. | 2 | 22 |
| 620 | 59.80 | radiation | 1 | 4320 | < th | dose dependent | rect. | 22 | 22 |
| 637 | 59.81 | radiation | 1 | 4320 | < th | dose dependent | rect. | 23 | 20 |
| 647 | 59.82 | radiation | 1 | 4320 | < th | dose dependent | no | NA | NA |
| 689 | 59.87 | radiation | 1 | 4320 | < th | dose independent | rect. | 12 | 19 |
| 707 | 59.91 | radiation | 1 | 4320 | < th | dose independent | rect. | 14 | 16 |
| 740 | 59.93 | radiation | 1 | 4320 | < th | dose dependent | rect. | 15 | 5 |
| 771 | 59.95 | radiation | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 822 | 59.97 | radiation | 1 | 4320 | < th | dose dependent | rect. | 15 | 9 |
| 824 | 59.97 | radiation | 1 | 4320 | < th | dose dependent | rect. | 15 | 12 |
| 921 | 60.11 | humidity | 80 | 43200 | > th | dose independent | rect. | 10 | 5 |