Os04g0165900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0165900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 129.31 | 0.534 | 3.69 | -1.5 | 0.553 | 0.483 | -0.28 | -0.296 | -0.768 | 4.08 | 20.11 | 38 | -- | -- |
| 129.7 | 0.53 | 3.69 | -1.45 | 0.558 | 0.503 | -0.135 | -- | -0.756 | 4.06 | 20.16 | 37 | -- | -- |
| 129.5 | 0.53 | 3.69 | -1.48 | 0.553 | 0.493 | -- | -0.219 | -0.764 | 4.05 | 20.15 | 37 | -- | -- |
| 129.75 | 0.531 | 3.69 | -1.44 | 0.558 | 0.505 | -- | -- | -0.756 | 4.04 | 20.15 | 37 | -- | -- |
| 145.36 | 0.562 | 3.69 | -1.43 | -- | 0.353 | -- | -0.326 | -0.723 | -- | 20.14 | 37 | -- | -- |
| 139.71 | 0.554 | 3.66 | -1.31 | 0.479 | -- | -0.295 | -- | -0.665 | 4.71 | -- | -- | -- | -- |
| 139.94 | 0.554 | 3.66 | -1.31 | 0.476 | -- | -- | -- | -0.663 | 4.68 | -- | -- | -- | -- |
| 145.95 | 0.563 | 3.68 | -1.39 | -- | 0.373 | -- | -- | -0.718 | -- | 20.1 | 34 | -- | -- |
| 182.29 | 0.629 | 3.64 | -- | 0.492 | 0.266 | -- | -- | -0.558 | 4.38 | 20.2 | 50 | -- | -- |
| 151.99 | 0.576 | 3.67 | -1.29 | -- | -- | -- | -- | -0.651 | -- | -- | -- | -- | -- |
| 185.22 | 0.637 | 3.63 | -- | 0.452 | -- | -- | -- | -0.517 | 4.75 | -- | -- | -- | -- |
| 194.82 | 0.65 | 3.64 | -- | -- | 0.167 | -- | -- | -0.532 | -- | 20.13 | 38 | -- | -- |
| 196.07 | 0.654 | 3.64 | -- | -- | -- | -- | -- | -0.507 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 128.35 | wind | 9 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 2 | 128.41 | temperature | 20 | 90 | > th | dose independent | rect. | 9 | 23 |
| 3 | 128.51 | wind | 9 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 4 | 128.75 | temperature | 20 | 270 | > th | dose independent | rect. | 7 | 23 |
| 5 | 128.81 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 22 |
| 9 | 128.99 | temperature | 20 | 30 | > th | dose independent | rect. | 23 | 23 |
| 10 | 129.00 | temperature | 20 | 30 | > th | dose independent | rect. | 1 | 23 |
| 15 | 129.14 | temperature | 20 | 270 | < th | dose independent | rect. | 12 | 22 |
| 16 | 129.15 | temperature | 20 | 270 | < th | dose independent | rect. | 5 | 23 |
| 36 | 129.40 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 23 |
| 37 | 129.41 | temperature | 20 | 30 | > th | dose independent | rect. | 20 | 23 |
| 38 | 129.42 | temperature | 20 | 30 | > th | dose independent | no | NA | NA |
| 41 | 129.44 | temperature | 20 | 270 | < th | dose independent | rect. | 19 | 23 |
| 47 | 129.49 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 49 | 129.49 | temperature | 20 | 270 | < th | dose independent | rect. | 1 | 23 |
| 51 | 129.53 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 57 | 129.59 | temperature | 20 | 30 | < th | dose independent | rect. | 12 | 22 |
| 63 | 129.61 | temperature | 20 | 270 | < th | dose independent | rect. | 8 | 23 |
| 81 | 129.71 | temperature | 20 | 30 | < th | dose independent | rect. | 5 | 23 |
| 83 | 129.72 | temperature | 20 | 30 | < th | dose independent | rect. | 3 | 23 |
| 84 | 129.72 | temperature | 20 | 30 | < th | dose independent | rect. | 15 | 23 |
| 85 | 129.73 | temperature | 20 | 30 | < th | dose independent | no | NA | NA |
| 89 | 129.73 | temperature | 20 | 30 | < th | dose independent | rect. | 7 | 23 |
| 90 | 129.73 | temperature | 20 | 30 | < th | dose independent | rect. | 9 | 23 |
| 93 | 129.73 | temperature | 20 | 30 | < th | dose independent | rect. | 17 | 23 |
| 94 | 129.74 | temperature | 20 | 30 | < th | dose independent | rect. | 19 | 23 |
| 95 | 129.74 | temperature | 20 | 30 | < th | dose independent | rect. | 23 | 23 |
| 96 | 129.75 | temperature | 20 | 30 | < th | dose independent | rect. | 21 | 23 |
| 98 | 129.77 | temperature | 20 | 30 | < th | dose independent | rect. | 1 | 23 |
| 110 | 129.83 | temperature | 20 | 30 | > th | dose independent | rect. | 14 | 23 |
| 121 | 129.86 | temperature | 20 | 270 | < th | dose independent | rect. | 22 | 23 |
| 173 | 130.04 | temperature | 20 | 270 | > th | dose independent | rect. | 14 | 23 |
| 174 | 130.05 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 17 |
| 205 | 130.17 | wind | 9 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 239 | 130.24 | wind | 9 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 249 | 130.26 | temperature | 20 | 270 | > th | dose independent | rect. | 14 | 14 |
| 315 | 130.41 | wind | 9 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 325 | 130.43 | wind | 9 | 1440 | > th | dose dependent | rect. | 17 | 3 |
| 347 | 130.50 | temperature | 20 | 30 | > th | dose independent | rect. | 14 | 18 |
| 372 | 130.58 | temperature | 20 | 30 | > th | dose independent | rect. | 7 | 23 |
| 375 | 130.60 | temperature | 20 | 30 | > th | dose independent | sin | 10 | NA |
| 426 | 130.73 | wind | 9 | 1440 | < th | dose independent | rect. | 17 | 3 |
| 434 | 130.73 | wind | 9 | 1440 | > th | dose dependent | rect. | 14 | 4 |
| 461 | 130.78 | temperature | 20 | 30 | > th | dose independent | rect. | 23 | 20 |
| 472 | 130.81 | temperature | 20 | 270 | < th | dose independent | sin | 11 | NA |
| 477 | 130.82 | temperature | 20 | 270 | > th | dose independent | sin | 11 | NA |
| 493 | 130.85 | temperature | 20 | 30 | > th | dose independent | rect. | 14 | 16 |
| 523 | 130.92 | temperature | 20 | 30 | < th | dose independent | sin | 10 | NA |
| 538 | 130.96 | temperature | 20 | 30 | > th | dose independent | rect. | 23 | 9 |
| 656 | 131.22 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 5 |
| 675 | 131.26 | wind | 5 | 720 | > th | dose independent | rect. | 20 | 13 |
| 711 | 131.36 | temperature | 20 | 30 | > th | dose independent | rect. | 21 | 11 |
| 717 | 131.37 | wind | 5 | 4320 | > th | dose dependent | rect. | 18 | 8 |
| 731 | 131.40 | temperature | 20 | 90 | > th | dose independent | rect. | 1 | 17 |
| 759 | 131.46 | wind | 3 | 720 | > th | dose dependent | rect. | 20 | 14 |
| 765 | 131.48 | wind | 9 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 797 | 131.54 | wind | 5 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 798 | 131.54 | wind | 5 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 837 | 131.62 | wind | 5 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 860 | 131.66 | temperature | 20 | 30 | > th | dose independent | rect. | 17 | 23 |
| 884 | 131.71 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 10 |
| 891 | 131.72 | temperature | 20 | 10 | > th | dose independent | rect. | 5 | 23 |
| 923 | 131.79 | wind | 5 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 930 | 131.79 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 24 | 22 |
| 938 | 131.81 | wind | 5 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 960 | 131.85 | wind | 5 | 4320 | > th | dose independent | rect. | 18 | 8 |