BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0165900 Os04g0165900|Os04g0165900
(956 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G26090.1 | chr4:13224596-13227325 FORWARD LENGTH=910 65 3e-10
AT1G63350.1 | chr1:23494935-23497631 REVERSE LENGTH=899 60 6e-09
AT2G17050.1 | chr2:7410835-7415610 REVERSE LENGTH=1356 51 2e-06
AT5G63020.1 | chr5:25283252-25286002 REVERSE LENGTH=889 51 4e-06
>AT4G26090.1 | chr4:13224596-13227325 FORWARD LENGTH=910
Length = 909
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 114/273 (41%), Gaps = 38/273 (13%)
Query: 681 GISYANVVSAQALSAVSFMMNKAKSLHVHDNFSITSVNPKHVILTGDKEIRWDCLKRCHI 740
GI+ ++ + + L + + LHV + + N + G L+R I
Sbjct: 671 GITVLSLETLKTLFEFGALHKHIQHLHVEECNELLYFNLPSLTNHGRN------LRRLSI 724
Query: 741 ERCHKLNTVFS-TDYTKYCFETLEAFSAAELMMANCIWSRGRTASPRDDSSFAKLRSIHL 799
+ CH L + + D+ +LE + L +W G + S +R I++
Sbjct: 725 KSCHDLEYLVTPADFENDWLPSLEVLTLHSLHNLTRVW--GNSVS---QDCLRNIRCINI 779
Query: 800 HYCPRLTFVLPLSWPTSDSHLPSLETLHIVYCSELRQIFPVEAVALMEQPRGVLRFPKLK 859
+C +L V SW LP LE + + C E+ ++ +E P FP LK
Sbjct: 780 SHCNKLKNV---SWV---QKLPKLEVIELFDCREIEELISEHESPSVEDPT---LFPSLK 830
Query: 860 HIHLHDVPKLHEICEISRMVAPVLETIRVRGCWALKRIPAIDGSLRGQDSCPIVDCEKDW 919
+ D+P+L+ I SR +ET+ + C +K++P + R Q + P V CE+ W
Sbjct: 831 TLRTRDLPELNSILP-SRFSFQKVETLVITNCPRVKKLPFQER--RTQMNLPTVYCEEKW 887
Query: 920 WEKLEWEGMNVGHDPSLFEPRHSMYYKKALPRF 952
W+ LE + +P + Y LPRF
Sbjct: 888 WKALEKD-----------QPNEELCY---LPRF 906
>AT1G63350.1 | chr1:23494935-23497631 REVERSE LENGTH=899
Length = 898
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 71/138 (51%), Gaps = 9/138 (6%)
Query: 790 SFAKLRSIHLHYCPRLTFVLPLSWPTSDSHLPSLETLHIVYCSELRQIFPVEAVALMEQP 849
SF+ L ++L C RL + L + P+L+ LH+V ++L I E E+
Sbjct: 733 SFSSLIEVNLSNCRRLRELTFLMFA------PNLKRLHVVSSNQLEDIINKEKAHDGEKS 786
Query: 850 RGVLRFPKLKHIHLHDVPKLHEICEISRMVAPVLETIRVRGCWALKRIPAIDGSLR-GQD 908
G++ FPKL +HL+++ +L I S + P LE I V GC LK++P S + G +
Sbjct: 787 -GIVPFPKLNELHLYNLRELKNI-YWSPLPFPCLEKINVMGCPNLKKLPLDSKSGKHGGN 844
Query: 909 SCPIVDCEKDWWEKLEWE 926
I E +W ++EWE
Sbjct: 845 GLIITHREMEWITRVEWE 862
>AT2G17050.1 | chr2:7410835-7415610 REVERSE LENGTH=1356
Length = 1355
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 109/257 (42%), Gaps = 41/257 (15%)
Query: 288 KVQVLRLCNCAFNFSSPPFHCCHNLRFLGL-----DKCQDHRTQEAGEDKSNTSSALEIF 342
+V L + N F F HNLRFL + K Q R +EA + N
Sbjct: 363 EVIFLDMSNLKFFVKPDAFKSMHNLRFLKIYSSNPGKHQRIRFREALQSLPN-------- 414
Query: 343 QRLWVLDICYIDWELPFPTESTREQQMAMNIREVHINKGRIWRRNFAWRRLKNLRKLRVI 402
++ + WE +P +S + ++ E+++ ++ + W KNL L+++
Sbjct: 415 ------ELRLLHWE-DYPLQSLPQHFDPTHLVELNMPYSKLQK---LWGGTKNLEMLKMV 464
Query: 403 EPTHPWGNKGEIDEFADMLKLEILDLSKNTMIQVLPSLCGASSLKTLILDDCVVLEQVGP 462
+H + EI+E +E++DL T IQ P+ L+ + L CV ++
Sbjct: 465 RLSHSQ-DLVEIEELIKSKNIEVIDLQGCTKIQSFPATRHLQHLRVINLSGCVEIKSTQL 523
Query: 463 ---QGLPPSLESFSFASREGNKAKISSI--------SLAGCSSLVNFTL-RGPLQNLRGL 510
QG P +L+ + S G + SSI L+ C L N + +G L +L L
Sbjct: 524 EEFQGFPRNLKEL-YLSGTGIREVTSSIHLSSLEVLDLSNCKRLQNLPMGKGNLASLIKL 582
Query: 511 DLSGTMIKMLDLRDVQD 527
LSG L+++QD
Sbjct: 583 MLSGCS----KLQNIQD 595
>AT5G63020.1 | chr5:25283252-25286002 REVERSE LENGTH=889
Length = 888
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 785 PRDDSSFAKLRSIHLHYCPRLTFVLPLSWPTSDSHLPSLETLHIVYCSELRQIFPVEAVA 844
P + F L + L +C RL L+W P+L L ++ S+L+++ E
Sbjct: 732 PTTTTFFPNLSQVSLEFCTRLR---DLTWLI---FAPNLTVLRVISASDLKEVINKEKA- 784
Query: 845 LMEQPRGVLRFPKLKHIHLHDVPKLHEICEISRMVAPVLETIRVRGCWALKRIPAIDGSL 904
+ + ++ F +LK + L +V L I + P L+ I V GC L+++P S+
Sbjct: 785 ---EQQNLIPFQELKELRLENVQMLKHIHR-GPLPFPCLQKILVNGCSELRKLPLNFTSV 840
Query: 905 RGQDSCPIVDCEKDWWEKLEWE 926
D +++ K W E LEWE
Sbjct: 841 PRGDL--VIEAHKKWIEILEWE 860
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.137 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 22,293,325
Number of extensions: 984069
Number of successful extensions: 2921
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2959
Number of HSP's successfully gapped: 5
Length of query: 956
Length of database: 11,106,569
Length adjustment: 108
Effective length of query: 848
Effective length of database: 8,145,641
Effective search space: 6907503568
Effective search space used: 6907503568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 117 (49.7 bits)