Os04g0165500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0165500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.41 | 0.259 | 10.2 | 0.746 | 0.164 | -0.45 | -0.883 | -1.02 | 0.182 | 0.516 | 19.63 | 106 | -- | -- |
| 31.25 | 0.26 | 10.2 | 0.751 | 0.138 | -0.37 | -0.561 | -- | 0.181 | 0.637 | 8.177 | 124 | -- | -- |
| 32.46 | 0.265 | 10.2 | 0.776 | 0.149 | -0.352 | -- | 0.169 | 0.179 | 1.04 | 6.329 | 112 | -- | -- |
| 32.4 | 0.265 | 10.2 | 0.761 | 0.189 | -0.356 | -- | -- | 0.183 | 1.88 | 15.35 | 106 | -- | -- |
| 32.71 | 0.266 | 10.2 | 0.772 | -- | -0.471 | -- | 0.298 | 0.19 | -- | -0.07787 | 162 | -- | -- |
| 33.15 | 0.27 | 10.2 | 0.747 | 0.328 | -- | -0.553 | -- | 0.161 | 1.2 | -- | -- | -- | -- |
| 34.38 | 0.275 | 10.2 | 0.766 | 0.33 | -- | -- | -- | 0.164 | 1.49 | -- | -- | -- | -- |
| 32.92 | 0.267 | 10.2 | 0.776 | -- | -0.478 | -- | -- | 0.19 | -- | -0.6522 | 162 | -- | -- |
| 47.37 | 0.321 | 10.3 | -- | 0.23 | -0.456 | -- | -- | 0.0945 | 1.91 | 31.91 | 109 | -- | -- |
| 41.08 | 0.299 | 10.2 | 0.779 | -- | -- | -- | -- | 0.171 | -- | -- | -- | -- | -- |
| 49.85 | 0.33 | 10.3 | -- | 0.344 | -- | -- | -- | 0.0784 | 1.57 | -- | -- | -- | -- |
| 48.74 | 0.325 | 10.3 | -- | -- | -0.506 | -- | -- | 0.104 | -- | 1.989 | 115 | -- | -- |
| 57.1 | 0.353 | 10.3 | -- | -- | -- | -- | -- | 0.0844 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.19 | temperature | 25.0 | 270 | > th | dose dependent | sin | 8 | NA |
| 3 | 28.46 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 12 |
| 5 | 28.65 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 19 | 16 |
| 6 | 28.66 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 18 | 19 |
| 7 | 28.72 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 28 | 29.15 | temperature | 30.0 | 90 | > th | dose independent | sin | 5 | NA |
| 33 | 29.22 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 38 | 29.26 | temperature | 30.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 53 | 29.27 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 13 |
| 54 | 29.28 | temperature | 30.0 | 90 | < th | dose independent | sin | 5 | NA |
| 58 | 29.32 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 68 | 29.37 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 18 | 22 |
| 84 | 29.45 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 114 | 29.53 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 130 | 29.55 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 7 | 9 |
| 136 | 29.58 | temperature | 30.0 | 270 | < th | dose independent | sin | 8 | NA |
| 152 | 29.64 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 157 | 29.65 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 181 | 29.67 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 21 | 12 |
| 182 | 29.68 | radiation | 30.0 | 90 | < th | dose independent | rect. | 5 | 12 |
| 183 | 29.68 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 191 | 29.70 | radiation | 20.0 | 90 | < th | dose independent | rect. | 5 | 6 |
| 195 | 29.70 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 205 | 29.72 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 5 | 10 |
| 208 | 29.73 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 3 | 9 |
| 250 | 29.78 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 1 | 15 |
| 336 | 29.86 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 5 | 6 |
| 393 | 29.92 | radiation | 20.0 | 90 | < th | dose independent | rect. | 5 | 8 |
| 403 | 29.94 | wind | 7.0 | 90 | < th | dose independent | rect. | 7 | 22 |
| 435 | 29.97 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 3 |
| 437 | 29.97 | radiation | 10.0 | 270 | < th | dose independent | rect. | 3 | 8 |
| 446 | 29.98 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 15 | 22 |
| 450 | 30.00 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 452 | 30.00 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 3 |
| 506 | 30.06 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 549 | 30.08 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 7 | 23 |
| 559 | 30.10 | radiation | 10.0 | 270 | > th | dose independent | sin | 5 | NA |
| 615 | 30.13 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 620 | 30.14 | radiation | 20.0 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 635 | 30.15 | atmosphere | 1000.0 | 90 | > th | dose dependent | rect. | 5 | 2 |
| 667 | 30.17 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 691 | 30.19 | radiation | 1.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 704 | 30.19 | radiation | 1.0 | 270 | > th | dose dependent | sin | 6 | NA |
| 734 | 30.20 | humidity | 70.0 | 90 | > th | dose independent | rect. | 5 | 12 |
| 748 | 30.21 | wind | 9.0 | 720 | < th | dose independent | rect. | 7 | 12 |
| 754 | 30.21 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 12 |
| 758 | 30.22 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 761 | 30.22 | radiation | 10.0 | 270 | > th | dose independent | rect. | 15 | 22 |
| 768 | 30.23 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 7 |
| 769 | 30.23 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 7 |
| 792 | 30.23 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 7 |
| 804 | 30.24 | radiation | 10.0 | 270 | > th | dose dependent | sin | 11 | NA |
| 805 | 30.24 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 811 | 30.24 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 13 |
| 817 | 30.25 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 818 | 30.25 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 5 |
| 820 | 30.25 | temperature | 25.0 | 270 | < th | dose independent | rect. | 2 | 8 |
| 839 | 30.26 | radiation | 30.0 | 90 | < th | dose independent | rect. | 19 | 23 |
| 862 | 30.26 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 22 |
| 882 | 30.27 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 5 | 13 |
| 896 | 30.27 | temperature | 30.0 | 30 | < th | dose independent | rect. | 7 | 23 |
| 897 | 30.27 | temperature | 10.0 | 90 | > th | dose dependent | sin | 1 | NA |
| 898 | 30.27 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 907 | 30.28 | wind | 1.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 943 | 30.29 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 5 |
| 988 | 30.30 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 989 | 30.31 | radiation | 30.0 | 90 | < th | dose independent | sin | 3 | NA |