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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0164900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Starch debranching enzyme precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.95 (0.0452) R2 : 0.512
β1 : -2.58 (0.164) R2dD : 0.277 R2D : 0.0477
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.29 (0.199) R2dE : 0.155 R2E : -0.0914
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.68 (0.1) R2dN8 : 0.444 R2N8 : 0.0919
σ : 0.835
deviance : 321.63
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 6.05
memory length : 1557
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
294.61 0.806 4.97 -3 0.904 -1.78 0.431 3.13 -1.74 12.6 6.271 1419 -- --
308.97 0.819 4.93 -2.57 0.901 -1.69 0.548 -- -1.63 12.7 6.45 1429 -- --
294.65 0.799 4.95 -2.97 1.07 -1.73 -- 3.23 -1.73 12.5 6.672 1387 -- --
310.25 0.82 4.93 -2.55 0.894 -1.67 -- -- -1.62 12.8 6.398 1429 -- --
313.13 0.824 4.98 -2.99 -- -2.3 -- 3.37 -1.77 -- 5.99 1535 -- --
371.38 0.903 4.86 -2.39 0.828 -- 0.228 -- -1.32 12.6 -- -- -- --
371.59 0.903 4.86 -2.38 0.828 -- -- -- -1.32 12.7 -- -- -- --
321.63 0.835 4.95 -2.58 -- -2.29 -- -- -1.68 -- 6.05 1557 -- --
465.22 1 4.89 -- 0.682 -1.64 -- -- -1.36 13.3 10 1495 -- --
414.45 0.951 4.88 -2.41 -- -- -- -- -1.33 -- -- -- -- --
521.24 1.07 4.8 -- 0.865 -- -- -- -1.05 12.8 -- -- -- --
477.66 1.02 4.88 -- -- -2.01 -- -- -1.36 -- 9.999 1615 -- --
567.98 1.11 4.82 -- -- -- -- -- -1.06 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 280.34 radiation 10 1440 > th dose independent rect. 9 3
2 283.80 humidity 70 1440 > th dose dependent rect. 9 4
13 290.68 radiation 10 1440 > th dose independent rect. 9 1
16 291.73 radiation 10 1440 < th dose dependent rect. 8 9
17 291.85 humidity 80 1440 > th dose independent rect. 9 3
19 291.96 humidity 80 1440 < th dose independent rect. 9 3
23 293.17 radiation 10 1440 < th dose dependent rect. 8 12
25 293.23 radiation 10 1440 < th dose dependent rect. 8 19
28 293.26 radiation 10 1440 < th dose dependent rect. 8 17
56 295.62 humidity 90 1440 < th dose dependent rect. 11 1
58 295.67 radiation 10 1440 > th dose independent rect. 9 7
80 296.66 humidity 80 1440 < th dose independent rect. 10 1
83 296.73 radiation 10 1440 < th dose dependent sin 22 NA
155 299.45 humidity 80 1440 > th dose independent rect. 10 1
156 299.51 humidity 90 1440 < th dose dependent rect. 10 3
161 299.75 humidity 90 1440 < th dose dependent rect. 9 5
172 300.32 radiation 1 1440 < th dose independent rect. 10 2
173 300.32 radiation 1 1440 < th dose dependent rect. 10 2
174 300.34 radiation 10 1440 < th dose dependent rect. 15 2
182 300.74 radiation 10 1440 > th dose independent sin 0 NA
230 301.36 radiation 10 1440 > th dose independent rect. 15 23
237 301.67 humidity 70 720 > th dose dependent rect. 7 17
288 302.59 radiation 10 1440 > th dose independent rect. 13 23
302 302.93 humidity 60 720 > th dose dependent rect. 5 21
303 303.04 humidity 60 720 > th dose dependent rect. 3 23
312 303.21 humidity 60 720 > th dose dependent rect. 18 22
329 303.44 radiation 10 1440 > th dose independent no NA NA
414 303.82 humidity 60 720 > th dose dependent rect. 7 23
418 303.85 humidity 90 1440 < th dose dependent rect. 1 13
419 303.88 humidity 70 720 > th dose dependent rect. 9 14
434 304.10 humidity 60 720 > th dose dependent rect. 5 23
460 304.37 humidity 60 720 > th dose dependent rect. 1 23
466 304.47 humidity 60 720 > th dose dependent rect. 20 23
481 304.62 humidity 50 1440 > th dose dependent sin 2 NA
504 304.71 humidity 90 1440 < th dose dependent sin 3 NA
557 305.03 humidity 60 720 > th dose dependent rect. 9 23
562 305.07 radiation 10 1440 < th dose dependent rect. 18 23
570 305.12 humidity 80 720 > th dose dependent sin 23 NA
575 305.17 radiation 10 1440 < th dose dependent rect. 23 21
577 305.19 radiation 10 1440 < th dose dependent rect. 2 18
594 305.24 radiation 10 1440 < th dose dependent rect. 11 23
606 305.26 radiation 10 1440 < th dose dependent no NA NA
614 305.26 humidity 60 720 > th dose dependent rect. 22 23
615 305.26 radiation 10 1440 < th dose dependent rect. 2 23
633 305.30 humidity 60 720 > th dose dependent no NA NA
699 305.79 radiation 20 1440 < th dose dependent rect. 9 3
704 305.82 radiation 10 1440 < th dose dependent rect. 9 5
734 306.13 radiation 20 1440 < th dose dependent rect. 9 1
772 306.31 humidity 70 30 > th dose dependent rect. 5 23
773 306.31 radiation 10 1440 < th dose dependent rect. 15 23
803 306.57 humidity 90 720 < th dose dependent rect. 17 23
898 307.21 humidity 60 720 > th dose dependent rect. 11 23
938 307.63 humidity 90 720 < th dose dependent rect. 6 18
941 307.65 humidity 80 1440 > th dose independent sin 3 NA
950 307.70 humidity 90 720 < th dose dependent rect. 8 16
972 307.86 humidity 90 720 < th dose dependent rect. 15 23