BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0164900 Os04g0164900|D50602
(621 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G04360.1 | chr5:1221566-1228399 FORWARD LENGTH=966 848 0.0
AT4G09020.1 | chr4:5784099-5788839 FORWARD LENGTH=765 85 1e-16
AT2G39930.1 | chr2:16666078-16672183 FORWARD LENGTH=784 62 6e-10
>AT5G04360.1 | chr5:1221566-1228399 FORWARD LENGTH=966
Length = 965
Score = 848 bits (2191), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/608 (66%), Positives = 480/608 (78%)
Query: 13 GRIMETVMQDSAGIRHLRKLSAAGLTHVHLLPSFHFASVDDNKSNWKFVDEAQLAKLPPG 72
G + +DSAG++HL+KL AGLTH+HLLP+F F VDD K NWK VD + L L P
Sbjct: 356 GGYLAFTSKDSAGVKHLQKLVDAGLTHLHLLPTFQFGDVDDEKENWKSVDTSLLEGLRPD 415
Query: 73 SDEQQAAIVSIQQEDPYNWGYDPVLWGVPKGSYASNPDGPSRIIEYRQMVQALNRIGLRV 132
S E QA I IQ +D YNWGY+PVLWGVPKGSYAS+P GP RIIE+R+MVQALN GL V
Sbjct: 416 STEAQARITEIQNDDGYNWGYNPVLWGVPKGSYASDPTGPCRIIEFRKMVQALNCTGLNV 475
Query: 133 VMDVVYNHLDSSGPFGVSSVLDKIVPGYYLRRNVNGQIENSAAMNNTASEHFMVDRLIVD 192
V+DVVYNHL +SGP SVLDKIVPGYYLRRN +G IENS +NNTASEH+MVDRLI D
Sbjct: 476 VLDVVYNHLHASGPHDKESVLDKIVPGYYLRRNSDGFIENSTCVNNTASEHYMVDRLIRD 535
Query: 193 DLLNWAINYKVDGFRFDLMGHIMKSTMIRAKSAIRSLTRDVHGVDGSKIYLYGEGWDFGE 252
DLLNW +NYKVDGFRFDLMGHIMK+T++ AKSAI SL ++ GVDGS+IYLYGEGW+FGE
Sbjct: 536 DLLNWVVNYKVDGFRFDLMGHIMKATIVNAKSAIGSLRKETDGVDGSRIYLYGEGWNFGE 595
Query: 253 VAQNKRGINASQINMSGTGIGSFNDRIRDSVNGGNPFGNPLQQGFSTGLFLEPNGYYQGN 312
VA+N RGINASQ N+ GTGIGSFNDRIRD+ GG+PFG+PLQQGF TGL L+PN + G+
Sbjct: 596 VAENGRGINASQFNLGGTGIGSFNDRIRDATLGGSPFGHPLQQGFITGLLLQPNAHDHGS 655
Query: 313 EADTRRELATYADHIQIGLAGNLKDYVLRTHTGEAKKGSDIYTFDGSPVGYTSSPVETIN 372
EA L+T +HIQ G+A NLKDY+L H G+ KGS++ D +PV Y S P ETIN
Sbjct: 656 EATQELMLSTAKNHIQTGMAANLKDYMLTNHEGKEVKGSEVLMHDATPVAYASLPTETIN 715
Query: 373 YVSAHDNETLFDIVSIKTPIGLSIDEKCRINHLASSMIALSQGIPFFHAGDEILRSKSLD 432
YVSAHDNETLFDI+S+KTP+ +S+DE+CRINHLASSMIALSQGIPFFHAGDEILRSKSLD
Sbjct: 716 YVSAHDNETLFDIISLKTPMEISVDERCRINHLASSMIALSQGIPFFHAGDEILRSKSLD 775
Query: 433 RDSYNSGDWFNKLDFTYETNNWGVGLPPRDKNEENWHLIKPRLENPSFRPLKNHILSVFD 492
RDSYNSGDWFN+LDF+Y +NNWGVGLPP+ KNE NW LIKPRL++PSF+P +HI++
Sbjct: 776 RDSYNSGDWFNRLDFSYSSNNWGVGLPPKGKNEHNWPLIKPRLQDPSFKPKSSHIVATLH 835
Query: 493 NFVDILKIRYSSPLFRLSTASDIEQRVRFHNTGPSMVPGVIVMSIKDAQNEKCKMAQLDK 552
NF+D+L+IRYSSPLFRL TA I++RVRFHNTGPS +PG IVMSI+D ++Q+D
Sbjct: 836 NFLDLLRIRYSSPLFRLDTARAIQERVRFHNTGPSSIPGAIVMSIEDGHRGIPSVSQIDP 895
Query: 553 NFSYVVTIFNVCPHEVSIEIHDLASLGLELHPIQVNSSDALVRQSAYEASKGRFTVPRRT 612
+S +V IFN P E S L LELHP+QV S+D +V++S Y++ G FTVP RT
Sbjct: 896 IYSLIVVIFNARPSEFSYPSPALKDRKLELHPVQVMSADEIVKKSVYDSFSGGFTVPART 955
Query: 613 TAVFVQPR 620
T VFV+ R
Sbjct: 956 TTVFVESR 963
>AT4G09020.1 | chr4:5784099-5788839 FORWARD LENGTH=765
Length = 764
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 105/232 (45%), Gaps = 36/232 (15%)
Query: 26 IRHLRKLSAAGLTHVHLLPSFHFASVDDNKSNWKFVDEAQLAKLPPGSDEQQAAIVSIQQ 85
I HL+ L G+ V LLP F F DE +L + D
Sbjct: 269 IPHLQDL---GINAVELLPVFEF-------------DELELQRRSNPRDHMVNT------ 306
Query: 86 EDPYNWGYDPVLWGVPKGSYASNPDGPSRII-EYRQMVQALNRIGLRVVMDVVYNHL-DS 143
WGY V + P YAS P + E+++MV+AL+ G+ V++DVVYNH ++
Sbjct: 307 -----WGYSTVNFFAPMSRYASGEGDPIKASKEFKEMVKALHSAGIEVILDVVYNHTNEA 361
Query: 144 SGPFGVSSVLDKIVPGYYLRRNVNGQIENSAAMNNTAS-EHFMVDRLIVDDLLNWAINYK 202
+ ++ I Y + N Q+ N + NT + H +V LI+D L +W Y
Sbjct: 362 DDKYPYTTSFRGIDNKVYYMLDPNNQLLNFSGCGNTLNCNHPVVMELILDSLRHWVTEYH 421
Query: 203 VDGFRFDLMGHIMKST---MIRAKSAIRSLTRDVHGVDGSKIYLYGEGWDFG 251
VDGFRFDL + ++T + A IR++ +D S+ + E WD G
Sbjct: 422 VDGFRFDLASVLCRATDGSPLSAPPLIRAIAKDSV---LSRCKIIAEPWDCG 470
>AT2G39930.1 | chr2:16666078-16672183 FORWARD LENGTH=784
Length = 783
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 100/389 (25%), Positives = 149/389 (38%), Gaps = 81/389 (20%)
Query: 91 WGYDPVLWGVPKGSYAS---NPDGPSRIIEYRQMVQALNRIGLRVVMDVVYNHL---DSS 144
WGY + + P YAS N I E++ +V+ ++ G+ V+MDVV NH +
Sbjct: 288 WGYSTIGFFSPMIRYASASSNNFAGRAINEFKILVKEAHKRGIEVIMDVVLNHTAEGNEK 347
Query: 145 GPFGVSSVLDKIVPGYYLRRNVNGQIENSAAMNNT-ASEHFMVDRLIVDDLLNWAINYKV 203
GP +D V YY+ G+ N + NT H +V + I+D L W V
Sbjct: 348 GPIFSFRGVDNSV--YYMLA-PKGEFYNYSGCGNTFNCNHPVVRQFILDCLRYWVTEMHV 404
Query: 204 DGFRFDLMGHIMK-----------------------STMIRAKSAIRSLTRD--VHGVDG 238
DGFRFDL G IM T I I ++ D + GV
Sbjct: 405 DGFRFDL-GSIMSRSSSLWDAANVYGADVEGDLLTTGTPISCPPVIDMISNDPILRGVK- 462
Query: 239 SKIYLYGEGWDFGEVAQ----NKRGINASQINMSGTGIGSFNDRIRDSVNGGNPFGNPLQ 294
L E WD G + Q GI S+ N G F D +R + G + F
Sbjct: 463 ----LIAEAWDAGGLYQVGMFPHWGI-WSEWN------GKFRDVVRQFIKGTDGFSG--- 508
Query: 295 QGFSTGLFLEPNGYYQGNEADTRRELATYADHIQIGLAGNLKDYVLRTHTGEAKKGSDIY 354
F+ L PN Y G + + H LA +L Y + + ++ +D
Sbjct: 509 -AFAECLCGSPNLYQGGRKP--WHSINFICAHDGFTLA-DLVTYNNKNNLANGEENND-- 562
Query: 355 TFDGSPVGYTSSPVETINYVSAHDNETLFDIVSIKTPIGLSIDEKCRINHLASSMIALSQ 414
E NY E F +S+K + ++ N S M+ SQ
Sbjct: 563 -------------GENHNYSWNCGEEGDFASISVK-----RLRKRQMRNFFVSLMV--SQ 602
Query: 415 GIPFFHAGDEILRSKSLDRDSYNSGDWFN 443
G+P + GDE +K + ++Y ++ N
Sbjct: 603 GVPMIYMGDEYGHTKGGNNNTYCHDNYMN 631
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.136 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 14,082,565
Number of extensions: 633291
Number of successful extensions: 1315
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1312
Number of HSP's successfully gapped: 3
Length of query: 621
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 516
Effective length of database: 8,227,889
Effective search space: 4245590724
Effective search space used: 4245590724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 115 (48.9 bits)