Os04g0162800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF594 family protein.
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Os04g0162800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF594 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 122.78 | 0.521 | 2.92 | 0.192 | 0.136 | 0.509 | 0.0439 | -0.101 | -0.0177 | 23.5 | 48.86 | 12 | -- | -- |
| 122.52 | 0.519 | 2.92 | 0.183 | 0.123 | 0.551 | 0.105 | -- | -0.0277 | 23.2 | 50 | 12 | -- | -- |
| 122.04 | 0.515 | 2.92 | 0.191 | 0.124 | 0.556 | -- | -0.251 | -0.00402 | 23.2 | 50.05 | 14 | -- | -- |
| 121.96 | 0.514 | 2.92 | 0.188 | 0.129 | 0.69 | -- | -- | -0.0272 | 23.8 | 50.34 | 13 | -- | -- |
| 122.67 | 0.516 | 2.91 | 0.183 | -- | 0.617 | -- | -0.524 | -0.0107 | -- | 50.31 | 14 | -- | -- |
| 128.04 | 0.53 | 2.92 | 0.178 | 0.0292 | -- | 0.368 | -- | -0.0132 | 19.1 | -- | -- | -- | -- |
| 128.39 | 0.531 | 2.92 | 0.171 | 0.031 | -- | -- | -- | -0.0125 | 20.3 | -- | -- | -- | -- |
| 122.93 | 0.516 | 2.92 | 0.177 | -- | 0.624 | -- | -- | -0.0187 | -- | 50.34 | 13 | -- | -- |
| 122.73 | 0.516 | 2.92 | -- | 0.136 | 0.717 | -- | -- | -0.0405 | 23.8 | 50.31 | 13 | -- | -- |
| 128.44 | 0.53 | 2.91 | 0.171 | -- | -- | -- | -- | -0.0129 | -- | -- | -- | -- | -- |
| 129.16 | 0.532 | 2.92 | -- | 0.0303 | -- | -- | -- | -0.0316 | 20.7 | -- | -- | -- | -- |
| 123.75 | 0.518 | 2.92 | -- | -- | 0.62 | -- | -- | -0.0382 | -- | 50.31 | 13 | -- | -- |
| 129.21 | 0.531 | 2.92 | -- | -- | -- | -- | -- | -0.0318 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 117.00 | humidity | 80.0 | 30 | < th | dose dependent | rect. | 24 | 5 |
| 3 | 117.05 | humidity | 80.0 | 30 | < th | dose independent | rect. | 24 | 4 |
| 5 | 117.12 | precipitation | 0.1 | 30 | > th | dose independent | rect. | 7 | 7 |
| 13 | 117.12 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 7 | 7 |
| 21 | 117.13 | humidity | 90.0 | 10 | > th | dose independent | rect. | 13 | 1 |
| 22 | 117.13 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 13 | 1 |
| 32 | 117.13 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 13 | 1 |
| 33 | 117.13 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 13 | 1 |
| 43 | 117.18 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 13 | 1 |
| 45 | 117.19 | humidity | 90.0 | 90 | > th | dose independent | rect. | 13 | 1 |
| 124 | 118.14 | humidity | 80.0 | 270 | < th | dose dependent | rect. | 23 | 2 |
| 125 | 118.15 | humidity | 80.0 | 270 | < th | dose independent | rect. | 23 | 2 |
| 148 | 118.48 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 18 | 2 |
| 149 | 118.48 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 18 | 2 |
| 270 | 119.95 | humidity | 70.0 | 90 | < th | dose independent | rect. | 18 | 1 |
| 278 | 120.11 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 23 | 1 |
| 299 | 120.39 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 344 | 120.88 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 23 | 1 |
| 354 | 121.02 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 24 | 1 |
| 372 | 121.23 | humidity | 80.0 | 10 | < th | dose dependent | rect. | 20 | 9 |
| 403 | 121.47 | temperature | 25.0 | 10 | > th | dose independent | rect. | 23 | 1 |
| 404 | 121.47 | humidity | 80.0 | 10 | < th | dose independent | rect. | 20 | 9 |
| 428 | 121.69 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 23 | 3 |
| 510 | 122.23 | humidity | 70.0 | 90 | < th | dose dependent | rect. | 18 | 1 |
| 528 | 122.38 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 21 | 10 |
| 562 | 122.58 | humidity | 70.0 | 90 | < th | dose independent | rect. | 17 | 3 |
| 615 | 122.78 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 12 | 1 |
| 623 | 122.82 | radiation | 40.0 | 10 | > th | dose independent | rect. | 9 | 4 |
| 655 | 122.87 | humidity | 70.0 | 4320 | > th | dose dependent | rect. | 23 | 3 |
| 662 | 122.91 | humidity | 70.0 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 726 | 123.13 | temperature | 20.0 | 270 | < th | dose independent | rect. | 23 | 3 |
| 728 | 123.14 | humidity | 50.0 | 720 | < th | dose independent | rect. | 13 | 1 |
| 743 | 123.21 | radiation | 40.0 | 10 | > th | dose dependent | rect. | 9 | 4 |
| 866 | 123.39 | radiation | 40.0 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 868 | 123.41 | atmosphere | 995.0 | 270 | > th | dose independent | sin | 9 | NA |
| 869 | 123.41 | radiation | 40.0 | 10 | > th | dose independent | sin | 1 | NA |
| 873 | 123.42 | radiation | 40.0 | 10 | > th | dose dependent | sin | 22 | NA |
| 881 | 123.43 | radiation | 40.0 | 10 | < th | dose independent | rect. | 14 | 23 |
| 883 | 123.43 | radiation | 40.0 | 10 | > th | dose dependent | no | NA | NA |