Os04g0137100 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0137100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Pectate lyase (Fragment).

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	5.58	(0.0765)	R²	:	0.32
β₁	:	-3.33	(0.287)	R²_dD	:	0.218	R²_D	:	0.088
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	2.64	(0.245)	R²_dE	:	0.183	R²_E	:	0.0836
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-0.857	(0.164)	R²_dN8	:	0.0546	R²_N8	:	-0.000781
σ	:	1.43
deviance	:	943.62
__

_____

C
peak time of C	:	--
E
wheather	:	temperature
threshold	:	25.41
memory length	:	1113
response mode	:	> th
dose dependency	:	dose dependent
G
type of G	:	sin
peak or start time of G	:	7.69
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
905.98	1.41	5.7	-4.57	0.635	3.56	1.65	-6.65	-1.06	10.2	25.44	971	7.34	--
914.32	1.41	5.56	-3.39	0.598	2.92	1.89	--	-0.842	10.3	25.36	964	7.33	--
916.65	1.41	5.7	-4.55	0.644	3.58	--	-6.93	-1.06	10.2	25.46	976	7.39	--
929.93	1.42	5.56	-3.3	0.557	2.89	--	--	-0.83	10.1	25.34	965	7.07	--
931.43	1.42	5.74	-4.69	--	3.31	--	-6.77	-1.09	--	25.57	1120	7.68	--
1148.55	1.59	5.54	-2.7	0.754	--	1.66	--	-0.727	6.11	--	--	--	--
1153.2	1.59	5.54	-2.69	0.785	--	--	--	-0.736	5.21	--	--	--	--
943.62	1.43	5.58	-3.33	--	2.64	--	--	-0.857	--	25.41	1113	7.69	--
1202.9	1.62	5.47	--	0.564	2.32	--	--	-0.409	9.08	25.52	889	6.23	--
1185.39	1.61	5.55	-2.66	--	--	--	--	-0.716	--	--	--	--	--
1344.04	1.71	5.47	--	0.739	--	--	--	-0.436	5.35	--	--	--	--
1217.47	1.63	5.49	--	--	2.2	--	--	-0.45	--	25.4	971	6.39	--
1372.51	1.73	5.49	--	--	--	--	--	-0.421	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	914.39	temperature	25	720	> th	dose dependent	rect.	17	16
4	925.71	temperature	25	720	> th	dose dependent	sin	11	NA
10	930.98	temperature	25	720	> th	dose dependent	rect.	17	7
17	934.30	humidity	70	720	> th	dose independent	rect.	18	9
24	937.73	radiation	30	1440	> th	dose independent	rect.	16	16
59	942.67	humidity	70	720	< th	dose independent	rect.	18	2
112	944.84	temperature	25	1440	> th	dose dependent	rect.	7	17
139	945.39	temperature	25	1440	> th	dose dependent	rect.	16	1
175	945.94	temperature	25	1440	> th	dose dependent	no	NA	NA
191	946.20	temperature	25	1440	> th	dose dependent	rect.	18	23
201	946.36	temperature	25	1440	> th	dose dependent	rect.	18	1
206	946.44	temperature	25	1440	> th	dose dependent	rect.	21	23
276	947.84	radiation	30	1440	< th	dose independent	rect.	6	2
319	948.51	radiation	30	1440	> th	dose independent	rect.	7	1
409	950.47	radiation	30	1440	< th	dose independent	rect.	21	11
430	951.32	radiation	30	1440	< th	dose independent	rect.	19	13
433	951.36	radiation	10	1440	< th	dose dependent	rect.	18	9
437	951.53	radiation	30	1440	< th	dose independent	rect.	24	8
490	952.16	humidity	70	720	> th	dose independent	rect.	18	3
512	952.40	humidity	70	720	> th	dose independent	rect.	17	14
589	955.02	radiation	30	1440	< th	dose independent	rect.	17	15
608	955.23	radiation	10	1440	< th	dose dependent	rect.	18	7
641	956.37	humidity	80	720	< th	dose dependent	rect.	18	1
688	957.23	radiation	30	1440	< th	dose independent	rect.	2	6
716	958.09	radiation	20	1440	> th	dose dependent	rect.	16	16
718	958.15	temperature	30	1440	> th	dose independent	sin	14	NA
719	958.25	radiation	10	1440	< th	dose dependent	rect.	18	2
732	958.71	temperature	30	1440	< th	dose independent	sin	14	NA
890	959.87	temperature	30	1440	> th	dose independent	rect.	15	4
930	960.41	radiation	10	1440	< th	dose dependent	rect.	18	5
934	960.56	temperature	30	1440	< th	dose independent	rect.	11	11
935	960.59	temperature	30	1440	< th	dose independent	rect.	11	9
936	960.59	temperature	30	1440	< th	dose independent	rect.	11	14
937	960.59	temperature	30	1440	< th	dose independent	rect.	11	16
954	960.82	temperature	30	1440	< th	dose independent	rect.	11	20
956	960.85	radiation	30	14400	> th	dose independent	rect.	16	1