Os04g0132300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : AAR2 family protein.
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Os04g0132300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : AAR2 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.75 | 0.285 | 9.07 | -0.0636 | 1.38 | 0.435 | -0.305 | -4.75 | 0.845 | 18.6 | 30.3 | 4511 | -- | -- |
| 38.39 | 0.289 | 8.98 | 0.723 | 1.38 | -0.0976 | -0.265 | -- | 0.868 | 18.4 | 32.9 | 6932 | -- | -- |
| 36.98 | 0.283 | 9.07 | -0.0606 | 1.38 | 0.443 | -- | -4.85 | 0.848 | 18.6 | 30.4 | 4517 | -- | -- |
| 38.11 | 0.288 | 8.97 | 0.764 | 1.39 | -0.219 | -- | -- | 0.913 | 18.6 | 33.6 | 19512 | -- | -- |
| 135.43 | 0.545 | 8.95 | 0.61 | -- | 0.351 | -- | -0.162 | 0.842 | -- | 30.1 | 4265 | -- | -- |
| 39.1 | 0.293 | 8.98 | 0.685 | 1.39 | -- | -0.276 | -- | 0.862 | 18.5 | -- | -- | -- | -- |
| 39.29 | 0.294 | 8.98 | 0.689 | 1.39 | -- | -- | -- | 0.861 | 18.5 | -- | -- | -- | -- |
| 133 | 0.539 | 8.96 | 0.589 | -- | 0.328 | -- | -- | 0.813 | -- | 29.11 | 12893 | -- | -- |
| 46.04 | 0.316 | 9.03 | -- | 1.39 | 0.349 | -- | -- | 0.648 | 18.5 | 26.13 | 47520 | -- | -- |
| 139.59 | 0.552 | 8.95 | 0.654 | -- | -- | -- | -- | 0.832 | -- | -- | -- | -- | -- |
| 51.79 | 0.337 | 9 | -- | 1.38 | -- | -- | -- | 0.784 | 18.6 | -- | -- | -- | -- |
| 134.85 | 0.543 | 8.99 | -- | -- | 0.396 | -- | -- | 0.649 | -- | 26.13 | 47520 | -- | -- |
| 150.89 | 0.573 | 8.97 | -- | -- | -- | -- | -- | 0.76 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.54 | temperature | 20 | 10 | > th | dose independent | rect. | 14 | 19 |
| 3 | 33.58 | radiation | 1 | 10 | > th | dose dependent | rect. | 15 | 17 |
| 6 | 33.76 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 8 | 33.77 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 4 | 4 |
| 10 | 33.78 | radiation | 1 | 30 | > th | dose dependent | rect. | 5 | 3 |
| 24 | 33.83 | radiation | 10 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 49 | 34.05 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 1 | 6 |
| 74 | 34.10 | humidity | 90 | 10 | < th | dose independent | rect. | 4 | 5 |
| 78 | 34.10 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 4 | 5 |
| 86 | 34.16 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 12 |
| 92 | 34.27 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 10 |
| 95 | 34.29 | radiation | 30 | 30 | < th | dose dependent | sin | 12 | NA |
| 101 | 34.38 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 6 | 2 |
| 107 | 34.44 | temperature | 20 | 10 | > th | dose independent | rect. | 21 | 12 |
| 108 | 34.44 | humidity | 90 | 10 | < th | dose dependent | rect. | 6 | 2 |
| 112 | 34.48 | wind | 7 | 270 | < th | dose independent | rect. | 7 | 20 |
| 118 | 34.50 | radiation | 10 | 30 | > th | dose independent | rect. | 15 | 17 |
| 136 | 34.52 | wind | 5 | 90 | < th | dose independent | rect. | 9 | 19 |
| 146 | 34.58 | radiation | 10 | 30 | > th | dose independent | rect. | 6 | 2 |
| 162 | 34.60 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 13 |
| 165 | 34.61 | radiation | 1 | 30 | > th | dose dependent | sin | 12 | NA |
| 168 | 34.62 | temperature | 20 | 90 | > th | dose dependent | rect. | 3 | 5 |
| 201 | 34.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 212 | 34.71 | atmosphere | 1005 | 270 | < th | dose dependent | rect. | 5 | 1 |
| 219 | 34.71 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 6 |
| 248 | 34.74 | humidity | 90 | 10 | < th | dose independent | rect. | 2 | 7 |
| 260 | 34.76 | atmosphere | 1005 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 272 | 34.76 | wind | 9 | 30 | < th | dose dependent | rect. | 9 | 19 |
| 273 | 34.77 | temperature | 25 | 10 | > th | dose independent | rect. | 1 | 8 |
| 307 | 34.85 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 22 | 13 |
| 309 | 34.85 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 8 |
| 330 | 34.88 | humidity | 90 | 90 | < th | dose independent | rect. | 6 | 2 |
| 334 | 34.89 | radiation | 10 | 30 | > th | dose independent | sin | 12 | NA |
| 335 | 34.89 | wind | 7 | 270 | < th | dose independent | rect. | 16 | 11 |
| 347 | 34.94 | temperature | 25 | 10 | > th | dose independent | rect. | 4 | 5 |
| 368 | 34.96 | humidity | 90 | 10 | < th | dose dependent | rect. | 4 | 4 |
| 372 | 34.97 | temperature | 20 | 10 | > th | dose independent | rect. | 23 | 10 |
| 380 | 34.97 | temperature | 15 | 10 | > th | dose dependent | rect. | 14 | 19 |
| 387 | 34.99 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 4 | 1 |
| 400 | 35.02 | radiation | 30 | 90 | > th | dose independent | rect. | 7 | 1 |
| 443 | 35.07 | wind | 5 | 270 | < th | dose independent | rect. | 4 | 1 |
| 472 | 35.10 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 4 | 5 |
| 588 | 35.22 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 2 |
| 624 | 35.22 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 4 | 4 |
| 680 | 35.29 | wind | 3 | 270 | < th | dose independent | rect. | 3 | 4 |
| 684 | 35.29 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 753 | 35.33 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 8 |
| 757 | 35.34 | wind | 5 | 30 | < th | dose independent | rect. | 4 | 5 |
| 765 | 35.35 | atmosphere | 1015 | 270 | < th | dose independent | rect. | 11 | 11 |
| 769 | 35.35 | wind | 7 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 772 | 35.35 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 6 |
| 779 | 35.37 | temperature | 20 | 270 | > th | dose independent | rect. | 12 | 10 |
| 820 | 35.40 | humidity | 80 | 270 | > th | dose independent | rect. | 4 | 1 |
| 849 | 35.41 | wind | 7 | 270 | < th | dose independent | rect. | 22 | 13 |
| 882 | 35.44 | wind | 9 | 90 | < th | dose dependent | rect. | 9 | 10 |
| 890 | 35.46 | temperature | 15 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 892 | 35.46 | temperature | 15 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 923 | 35.48 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 24 | 10 |
| 926 | 35.49 | atmosphere | 1010 | 10 | < th | dose independent | rect. | 9 | 5 |
| 927 | 35.49 | wind | 7 | 90 | < th | dose independent | rect. | 8 | 11 |
| 931 | 35.49 | wind | 7 | 270 | < th | dose dependent | rect. | 3 | 4 |