Os04g0116200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF827, plant family protein.
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Os04g0116200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF827, plant family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 530.49 | 1.08 | 4.52 | 2.31 | 0.271 | 2.08 | 2.24 | 4.24 | 2.72 | 23 | 21.4 | 641 | 22.7 | -- |
| 552.78 | 1.1 | 4.61 | 1.49 | 0.407 | 1.86 | 1.84 | -- | 2.51 | 19.2 | 21.4 | 684 | 23.7 | -- |
| 531.14 | 1.07 | 4.48 | 2.44 | 0.527 | 1.7 | -- | 4.13 | 2.81 | 12.8 | 21.4 | 950 | 23.6 | -- |
| 561.96 | 1.1 | 4.61 | 1.43 | 0.343 | 1.82 | -- | -- | 2.51 | 14.9 | 21.5 | 871 | 0.304 | -- |
| 535.43 | 1.08 | 4.51 | 2.36 | -- | 1.99 | -- | 4.41 | 2.7 | -- | 21.6 | 829 | 23.3 | -- |
| 637.08 | 1.18 | 4.51 | 1.97 | 1.12 | -- | 0.364 | -- | 2.91 | 14.1 | -- | -- | -- | -- |
| 637.52 | 1.18 | 4.51 | 1.98 | 1.12 | -- | -- | -- | 2.91 | 14 | -- | -- | -- | -- |
| 564.32 | 1.11 | 4.6 | 1.45 | -- | 1.95 | -- | -- | 2.52 | -- | 21.4 | 745 | 23.2 | -- |
| 614.67 | 1.15 | 4.63 | -- | 0.31 | 2.12 | -- | -- | 2.4 | 10.1 | 21.41 | 923 | 23.8 | -- |
| 712.41 | 1.25 | 4.52 | 1.93 | -- | -- | -- | -- | 2.88 | -- | -- | -- | -- | -- |
| 740.8 | 1.27 | 4.56 | -- | 1.08 | -- | -- | -- | 2.69 | 14 | -- | -- | -- | -- |
| 612.63 | 1.15 | 4.65 | -- | -- | 2.33 | -- | -- | 2.29 | -- | 20.9 | 912 | 0.199 | -- |
| 810.98 | 1.33 | 4.57 | -- | -- | -- | -- | -- | 2.67 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 531.78 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 4 | 534.65 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 2 |
| 6 | 536.07 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 9 |
| 8 | 536.61 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 7 |
| 30 | 539.33 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 45 | 540.58 | temperature | 20 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 78 | 542.76 | temperature | 25 | 720 | < th | dose dependent | sin | 5 | NA |
| 90 | 543.33 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 11 |
| 139 | 544.98 | temperature | 10 | 720 | > th | dose dependent | sin | 7 | NA |
| 165 | 545.58 | temperature | 20 | 14400 | < th | dose dependent | rect. | 3 | 15 |
| 248 | 547.11 | temperature | 20 | 14400 | < th | dose dependent | sin | 3 | NA |
| 382 | 550.19 | temperature | 20 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 389 | 550.42 | temperature | 15 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 391 | 550.50 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 6 |
| 404 | 550.70 | temperature | 30 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 420 | 551.03 | temperature | 20 | 14400 | < th | dose dependent | rect. | 15 | 16 |
| 423 | 551.05 | wind | 1 | 14400 | < th | dose independent | rect. | 10 | 3 |
| 424 | 551.05 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 3 |
| 436 | 551.16 | temperature | 25 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 500 | 551.62 | temperature | 25 | 43200 | > th | dose independent | rect. | 20 | 4 |
| 517 | 551.71 | temperature | 25 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 533 | 551.79 | temperature | 25 | 43200 | < th | dose independent | rect. | 20 | 4 |
| 558 | 551.93 | temperature | 10 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 559 | 551.93 | temperature | 30 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 598 | 552.05 | wind | 1 | 14400 | > th | dose independent | rect. | 11 | 2 |
| 609 | 552.09 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 615 | 552.10 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 24 | 6 |
| 684 | 552.35 | temperature | 20 | 14400 | < th | dose dependent | no | NA | NA |
| 731 | 552.48 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 737 | 552.49 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 24 | 6 |
| 753 | 552.54 | temperature | 30 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 754 | 552.54 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 3 | 2 |
| 763 | 552.56 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 24 | 6 |
| 777 | 552.60 | temperature | 20 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 802 | 552.67 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 823 | 552.72 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 890 | 552.87 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 967 | 553.06 | humidity | 70 | 43200 | > th | dose independent | rect. | 14 | 1 |