Os04g0110600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Fus-prov protein.
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Os04g0110600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Fus-prov protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.39 | 0.334 | 10.7 | -2.34 | 0.135 | -0.444 | -1.21 | 1.6 | -0.747 | 10.1 | 20 | 1442 | -- | -- |
| 56.91 | 0.351 | 10.7 | -2.33 | 0.143 | -0.442 | -1.09 | -- | -0.744 | 9.95 | 20 | 1441 | -- | -- |
| 54.83 | 0.345 | 10.6 | -2.37 | 0.141 | -0.413 | -- | 1.94 | -0.721 | 7.58 | 19.98 | 1526 | -- | -- |
| 61.27 | 0.365 | 10.6 | -2.28 | 0.196 | -0.452 | -- | -- | -0.697 | 9.27 | 19.98 | 1344 | -- | -- |
| 56.26 | 0.349 | 10.6 | -2.36 | -- | -0.416 | -- | 1.8 | -0.724 | -- | 19.97 | 1534 | -- | -- |
| 62.83 | 0.372 | 10.6 | -2.18 | 0.125 | -- | -1.22 | -- | -0.609 | 10.2 | -- | -- | -- | -- |
| 68.12 | 0.387 | 10.6 | -2.23 | 0.174 | -- | -- | -- | -0.614 | 7.7 | -- | -- | -- | -- |
| 63.47 | 0.371 | 10.6 | -2.28 | -- | -0.402 | -- | -- | -0.73 | -- | 20 | 1519 | -- | -- |
| 176.68 | 0.619 | 10.6 | -- | 0.148 | -0.97 | -- | -- | -0.585 | 8.93 | 30 | 7326 | -- | -- |
| 69.75 | 0.39 | 10.6 | -2.23 | -- | -- | -- | -- | -0.612 | -- | -- | -- | -- | -- |
| 199.62 | 0.661 | 10.6 | -- | 0.161 | -- | -- | -- | -0.365 | 8.67 | -- | -- | -- | -- |
| 100.28 | 0.466 | 10.6 | -- | -- | -1.64 | -- | -- | -0.593 | -- | 59.96 | 34645 | -- | -- |
| 201.09 | 0.662 | 10.6 | -- | -- | -- | -- | -- | -0.364 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.26 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 8 |
| 2 | 49.26 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 10 |
| 3 | 49.27 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 6 |
| 8 | 49.28 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 3 |
| 13 | 49.32 | radiation | 30 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 18 | 49.75 | radiation | 20 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 20 | 49.83 | radiation | 20 | 1440 | < th | dose independent | rect. | 13 | 22 |
| 23 | 49.87 | radiation | 20 | 1440 | < th | dose independent | rect. | 13 | 19 |
| 24 | 49.88 | radiation | 20 | 1440 | < th | dose independent | sin | 18 | NA |
| 31 | 49.97 | radiation | 20 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 39 | 49.98 | radiation | 20 | 1440 | < th | dose independent | rect. | 9 | 9 |
| 91 | 50.19 | radiation | 30 | 4320 | > th | dose dependent | rect. | 15 | 17 |
| 107 | 50.25 | radiation | 20 | 1440 | < th | dose independent | rect. | 13 | 4 |
| 108 | 50.26 | radiation | 20 | 1440 | < th | dose independent | rect. | 13 | 12 |
| 110 | 50.27 | radiation | 20 | 1440 | < th | dose independent | rect. | 13 | 8 |
| 128 | 50.38 | radiation | 20 | 1440 | < th | dose independent | rect. | 6 | 17 |
| 129 | 50.38 | radiation | 20 | 1440 | < th | dose independent | rect. | 6 | 19 |
| 133 | 50.38 | radiation | 20 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 134 | 50.39 | radiation | 20 | 1440 | < th | dose independent | rect. | 6 | 12 |
| 157 | 50.39 | radiation | 20 | 1440 | < th | dose independent | rect. | 24 | 22 |
| 163 | 50.40 | radiation | 20 | 1440 | < th | dose independent | no | NA | NA |
| 258 | 50.53 | radiation | 1 | 1440 | > th | dose dependent | rect. | 10 | 21 |
| 278 | 50.61 | humidity | 60 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 303 | 50.65 | radiation | 30 | 1440 | < th | dose dependent | rect. | 9 | 22 |
| 310 | 50.66 | humidity | 60 | 43200 | < th | dose dependent | rect. | 19 | 14 |
| 344 | 50.78 | radiation | 1 | 1440 | > th | dose dependent | rect. | 10 | 9 |
| 406 | 50.92 | humidity | 60 | 43200 | < th | dose independent | rect. | 19 | 10 |
| 443 | 50.98 | radiation | 30 | 1440 | < th | dose dependent | rect. | 9 | 16 |
| 461 | 50.99 | radiation | 30 | 1440 | < th | dose dependent | rect. | 9 | 10 |
| 490 | 51.02 | humidity | 60 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 524 | 51.06 | radiation | 1 | 1440 | > th | dose dependent | sin | 19 | NA |
| 529 | 51.08 | radiation | 40 | 1440 | < th | dose dependent | rect. | 10 | 7 |
| 711 | 51.23 | radiation | 30 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 721 | 51.26 | radiation | 1 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 745 | 51.28 | radiation | 40 | 1440 | < th | dose dependent | sin | 20 | NA |
| 797 | 51.32 | humidity | 60 | 43200 | > th | dose independent | rect. | 19 | 10 |
| 801 | 51.32 | radiation | 1 | 1440 | > th | dose dependent | no | NA | NA |
| 805 | 51.32 | radiation | 40 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 806 | 51.32 | radiation | 1 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 814 | 51.32 | radiation | 1 | 1440 | > th | dose dependent | rect. | 4 | 15 |
| 863 | 51.32 | radiation | 1 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 912 | 51.35 | radiation | 1 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 918 | 51.36 | radiation | 30 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 936 | 51.38 | radiation | 1 | 1440 | > th | dose dependent | sin | 14 | NA |
| 966 | 51.40 | radiation | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 984 | 51.40 | radiation | 30 | 1440 | < th | dose dependent | rect. | 4 | 17 |
| 995 | 51.40 | radiation | 30 | 1440 | < th | dose dependent | rect. | 24 | 21 |