BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0110600 Os04g0110600|AK065187
         (249 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G17975.1  | chr2:7822238-7823970 REVERSE LENGTH=269            144   3e-35
AT5G25490.1  | chr5:8876639-8877339 FORWARD LENGTH=171             55   3e-08

>AT2G17975.1 | chr2:7822238-7823970 REVERSE LENGTH=269
          Length = 268

 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 83/171 (48%), Positives = 100/171 (58%), Gaps = 30/171 (17%)

Query: 72  NANQFSAAPKDWRSGDWLCSCGFHNYSSRTQCKQCSAPVPSGIPSTTMKTTVPDTSSTLG 131
           NA   ++  K+WRSGDW+C CGFHNYSSR QCK+C+   P                  LG
Sbjct: 115 NATNQASVHKEWRSGDWICRCGFHNYSSRIQCKKCNEIAPLA----------------LG 158

Query: 132 TKRLASEELANEWDNKRLNPGNASYPLSTAGTDNLFGGIEQGAGSSNGQTPYSKFDNGNS 191
           TKRLASE LA+EWD+KRLN G  S    +A   + F G+  G   SN Q P         
Sbjct: 159 TKRLASEALAHEWDSKRLNQGYTSMQTQSAIYAS-FPGMSLGR-VSNWQLP--------- 207

Query: 192 IALPSGQVSAMPGLIGKGAK-WREGDWMCSNCNNHNYASRAFCNRCKTQKE 241
             LP  Q  + P L+G G K WR+GDWMC+NC NHNYASRA CNRCKT ++
Sbjct: 208 --LPFLQQHSTPALLGMGVKQWRDGDWMCTNCKNHNYASRAECNRCKTTRD 256



>AT5G25490.1 | chr5:8876639-8877339 FORWARD LENGTH=171
          Length = 170

 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 71/176 (40%), Gaps = 23/176 (13%)

Query: 84  RSGDWLCS-CGFHNYSSRTQCKQCSAPVPSGIPSTTMKTTVPDTSSTLGTKRLASEELAN 142
           R GDW C  C   N+  R  C++C  P P GI +        D  S  G + ++S    N
Sbjct: 3   RPGDWNCRLCSHLNFQRRDSCQRCREPRPGGIST--------DLLSGFGGRPVSSSFGFN 54

Query: 143 EWDNKRLNPGNASYPLSTAGTDNLF----------GGIEQGAGSSNGQTPYSKFDNGNSI 192
              + R  PG+    L   GT N               E    S+   T +   + G   
Sbjct: 55  TGPDVR--PGDWYCNLGDCGTHNFANRSSCFKCGAAKDEFSCSSAAATTGFMDMNVGPRR 112

Query: 193 ALPSGQVSAMPGLIGKGAKWREGDWMC--SNCNNHNYASRAFCNRCKTQKEASVHP 246
            L     S+  G     + W+ GDW+C  S CN HN+ASR+ C RC   KE +  P
Sbjct: 113 GLFGFGGSSSGGGGTGRSPWKSGDWICPRSGCNEHNFASRSECFRCNAPKELATEP 168



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.128    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,844,903
Number of extensions: 256830
Number of successful extensions: 768
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 762
Number of HSP's successfully gapped: 7
Length of query: 249
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 153
Effective length of database: 8,474,633
Effective search space: 1296618849
Effective search space used: 1296618849
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)