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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0103900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Chalcone synthase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.96 (0.0145) R2 : 0.00438
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0433 (0.0306) R2dN8 : 0.00565 R2N8 : 0.00438
σ : 0.273
deviance : 34.28
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
33.1 0.27 2.96 0.0569 0.1 -0.0533 -0.0155 0.305 0.0503 10.8 79.99 89 -- --
33.53 0.27 2.96 0.0419 0.0988 -0.0559 0.141 -- 0.0507 10.9 79 119 -- --
33.1 0.268 2.96 0.0561 0.101 -0.0535 -- 0.299 0.0501 10.7 79.93 89 -- --
33.63 0.27 2.96 0.0437 0.103 -0.0583 -- -- 0.0478 10.9 79.69 119 -- --
33.65 0.27 2.96 0.0622 -- -0.0263 -- 0.312 0.058 -- 79.95 132 -- --
33.75 0.272 2.96 0.0385 0.0886 -- 0.104 -- 0.0474 9.17 -- -- -- --
33.78 0.272 2.96 0.0416 0.0905 -- -- -- 0.0471 8.6 -- -- -- --
33.86 0.271 2.96 0.046 -- -0.0902 -- -- 0.0472 -- 77 623 -- --
33.68 0.27 2.96 -- 0.103 -0.0576 -- -- 0.0431 10.9 79.63 119 -- --
34.24 0.273 2.96 0.0419 -- -- -- -- 0.0479 -- -- -- -- --
33.82 0.272 2.96 -- 0.0906 -- -- -- 0.0425 8.57 -- -- -- --
33.91 0.271 2.96 -- -- -0.089 -- -- 0.0429 -- 77.22 623 -- --
34.28 0.273 2.96 -- -- -- -- -- 0.0433 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 28.19 radiation 1.0 90 < th dose independent rect. 8 3
2 28.19 radiation 1.0 90 < th dose dependent rect. 8 3
11 30.43 temperature 25.0 30 > th dose dependent rect. 6 1
13 30.67 atmosphere 1010.0 30 < th dose independent rect. 6 1
14 30.75 radiation 10.0 30 < th dose independent rect. 6 1
20 31.01 atmosphere 1010.0 30 < th dose dependent rect. 6 1
23 31.16 wind 3.0 30 > th dose dependent rect. 6 1
29 31.63 wind 3.0 30 > th dose independent rect. 6 1
30 31.68 humidity 90.0 30 < th dose dependent rect. 6 1
35 31.95 radiation 1.0 10 > th dose dependent rect. 6 1
36 31.96 temperature 25.0 30 > th dose dependent rect. 2 5
40 32.02 temperature 25.0 30 > th dose independent rect. 6 1
43 32.07 radiation 20.0 30 < th dose dependent rect. 6 1
50 32.27 radiation 20.0 1440 < th dose dependent rect. 21 1
53 32.28 temperature 10.0 1440 > th dose independent rect. 21 1
56 32.28 temperature 30.0 1440 < th dose independent rect. 21 1
60 32.28 humidity 50.0 1440 > th dose independent rect. 21 1
66 32.28 atmosphere 995.0 1440 > th dose independent rect. 21 1
67 32.28 radiation 1.0 1440 < th dose independent rect. 21 1
87 32.28 temperature 10.0 1440 > th dose independent rect. 22 23
91 32.29 wind 3.0 30 > th dose independent rect. 20 1
92 32.29 temperature 25.0 30 > th dose independent rect. 20 1
95 32.30 humidity 80.0 30 > th dose independent rect. 20 1
96 32.30 atmosphere 1005.0 30 > th dose dependent rect. 20 1
97 32.31 temperature 15.0 30 > th dose dependent rect. 20 1
101 32.31 temperature 25.0 10 > th dose dependent rect. 24 7
102 32.32 humidity 90.0 30 < th dose independent rect. 20 1
103 32.32 atmosphere 1005.0 30 > th dose independent rect. 20 1
104 32.32 wind 1.0 30 > th dose dependent rect. 20 1
109 32.33 wind 5.0 30 < th dose independent rect. 20 1
112 32.33 temperature 10.0 30 > th dose independent rect. 20 1
115 32.33 temperature 30.0 30 < th dose independent rect. 20 1
116 32.33 humidity 50.0 30 > th dose independent rect. 20 1
119 32.33 atmosphere 995.0 30 > th dose independent rect. 20 1
121 32.33 atmosphere 1010.0 30 < th dose independent rect. 20 1
123 32.33 radiation 1.0 30 < th dose independent rect. 20 1
128 32.33 precipitation 0.1 30 < th dose independent rect. 20 1
129 32.33 temperature 10.0 30 > th dose independent rect. 21 23
130 32.33 humidity 50.0 30 > th dose dependent rect. 20 1
132 32.33 radiation 1.0 30 < th dose dependent rect. 20 1
137 32.33 precipitation 0.1 30 < th dose dependent rect. 20 1
138 32.34 wind 9.0 30 < th dose dependent rect. 20 1
140 32.35 wind 9.0 1440 < th dose independent rect. 7 1
141 32.35 temperature 10.0 1440 > th dose independent rect. 7 1
146 32.35 temperature 30.0 1440 < th dose independent rect. 7 1
150 32.35 humidity 50.0 1440 > th dose independent rect. 7 1
155 32.35 atmosphere 995.0 1440 > th dose independent rect. 7 1
156 32.35 atmosphere 1015.0 1440 < th dose independent rect. 7 1
157 32.35 temperature 10.0 1440 > th dose independent rect. 8 23
160 32.35 radiation 40.0 14400 < th dose dependent rect. 21 1
161 32.36 wind 9.0 1440 < th dose independent rect. 21 1
162 32.36 humidity 90.0 30 < th dose independent rect. 6 1
164 32.36 wind 9.0 30 < th dose independent rect. 21 23
170 32.38 temperature 15.0 720 > th dose independent rect. 19 8
171 32.38 temperature 15.0 720 > th dose independent rect. 3 16
172 32.38 atmosphere 1015.0 30 < th dose dependent rect. 20 1
176 32.39 atmosphere 1005.0 30 > th dose independent rect. 6 1
179 32.39 humidity 90.0 30 < th dose dependent rect. 20 1
187 32.41 wind 5.0 30 < th dose independent rect. 6 1
190 32.41 temperature 10.0 30 > th dose independent rect. 6 1
192 32.41 temperature 30.0 30 < th dose independent rect. 6 1
193 32.41 humidity 50.0 30 > th dose independent rect. 6 1
197 32.41 atmosphere 995.0 30 > th dose independent rect. 6 1
203 32.41 precipitation 0.1 30 < th dose independent rect. 6 1
204 32.41 temperature 10.0 30 > th dose independent rect. 7 23
206 32.41 precipitation 0.1 30 < th dose dependent rect. 6 1
207 32.42 radiation 1.0 30 > th dose independent rect. 6 1
209 32.43 temperature 30.0 30 < th dose dependent rect. 20 1
211 32.44 wind 9.0 720 < th dose independent rect. 19 8
212 32.44 temperature 15.0 720 > th dose independent rect. 15 16
220 32.46 wind 1.0 30 < th dose independent rect. 6 1
222 32.46 temperature 15.0 720 > th dose independent rect. 7 8
225 32.46 radiation 1.0 720 < th dose dependent rect. 19 8
227 32.47 temperature 15.0 720 > th dose independent rect. 9 8
229 32.47 temperature 30.0 720 < th dose independent rect. 19 8
230 32.47 humidity 50.0 720 > th dose independent rect. 19 8
231 32.47 atmosphere 995.0 720 > th dose independent rect. 19 8
232 32.47 radiation 1.0 720 < th dose independent rect. 19 8
238 32.47 wind 9.0 30 < th dose independent rect. 7 23
250 32.50 wind 9.0 720 < th dose independent rect. 15 16
253 32.51 atmosphere 1015.0 720 < th dose independent rect. 7 8
255 32.51 atmosphere 1015.0 720 < th dose independent rect. 3 16
259 32.52 humidity 50.0 30 > th dose dependent rect. 6 1
262 32.53 temperature 15.0 720 > th dose independent rect. 17 16
263 32.53 radiation 40.0 720 < th dose independent rect. 15 16
286 32.55 temperature 15.0 720 > th dose independent rect. 5 16
288 32.55 wind 9.0 30 < th dose dependent rect. 6 1
301 32.58 wind 9.0 720 < th dose independent rect. 7 8
303 32.58 atmosphere 1015.0 720 < th dose independent rect. 9 8
306 32.59 wind 9.0 720 < th dose independent rect. 17 16
311 32.61 wind 9.0 720 < th dose independent rect. 3 16
330 32.62 radiation 1.0 720 < th dose independent rect. 21 8
332 32.62 radiation 40.0 720 < th dose independent rect. 17 16
337 32.63 temperature 10.0 720 > th dose independent rect. 21 8
338 32.63 temperature 30.0 720 < th dose independent rect. 21 8
339 32.63 humidity 50.0 720 > th dose independent rect. 21 8
342 32.63 atmosphere 995.0 720 > th dose independent rect. 21 8
348 32.63 atmosphere 995.0 30 > th dose dependent rect. 6 1
350 32.63 radiation 10.0 720 < th dose dependent rect. 21 8
355 32.65 wind 9.0 720 < th dose independent rect. 21 8
358 32.66 temperature 25.0 720 > th dose dependent rect. 3 6
364 32.67 temperature 25.0 720 > th dose dependent rect. 7 2
373 32.69 temperature 25.0 30 > th dose dependent rect. 20 11
378 32.72 radiation 1.0 720 > th dose independent rect. 4 1
390 32.72 radiation 1.0 720 > th dose dependent rect. 4 1
400 32.73 temperature 25.0 720 > th dose independent rect. 7 2
405 32.75 temperature 25.0 720 > th dose independent rect. 3 6
406 32.75 wind 9.0 720 < th dose independent rect. 9 8
407 32.75 radiation 20.0 10 < th dose dependent rect. 21 23
422 32.79 precipitation 0.1 720 < th dose independent rect. 9 8
423 32.79 atmosphere 995.0 30 > th dose independent rect. 21 23
425 32.79 precipitation 0.1 720 < th dose dependent rect. 9 8
428 32.81 temperature 30.0 14400 > th dose dependent rect. 17 1
447 32.82 atmosphere 995.0 720 > th dose independent rect. 7 8
458 32.85 temperature 30.0 14400 > th dose independent rect. 17 1
465 32.86 temperature 30.0 14400 < th dose independent rect. 17 1
466 32.86 radiation 1.0 1440 > th dose independent rect. 9 1
496 32.86 atmosphere 995.0 90 > th dose independent rect. 3 16
498 32.86 atmosphere 995.0 10 > th dose dependent rect. 20 8
502 32.87 temperature 25.0 30 > th dose independent rect. 8 12
503 32.87 wind 9.0 720 < th dose independent rect. 5 16
506 32.87 atmosphere 995.0 30 > th dose independent rect. 7 23
508 32.87 atmosphere 995.0 90 > th dose dependent rect. 19 8
514 32.88 atmosphere 995.0 10 > th dose dependent rect. 14 6
524 32.88 temperature 10.0 90 > th dose dependent rect. 3 16
537 32.89 temperature 25.0 90 > th dose independent rect. 24 7
567 32.90 wind 5.0 90 < th dose independent rect. 19 8
577 32.91 radiation 20.0 10 > th dose independent rect. 8 2
623 32.92 precipitation 0.1 720 < th dose independent rect. 7 8
626 32.92 radiation 20.0 10 < th dose independent rect. 21 23
628 32.92 precipitation 0.1 720 < th dose dependent rect. 7 8
631 32.93 temperature 30.0 14400 > th dose independent sin 11 NA
632 32.93 temperature 30.0 14400 < th dose independent sin 11 NA
633 32.93 wind 3.0 30 > th dose independent rect. 9 1
639 32.93 temperature 25.0 720 < th dose independent rect. 2 7
641 32.93 wind 9.0 90 < th dose independent rect. 3 16
643 32.93 temperature 30.0 14400 > th dose dependent sin 11 NA
655 32.94 atmosphere 995.0 10 > th dose independent rect. 14 6
656 32.94 wind 5.0 10 < th dose independent rect. 20 8
659 32.94 temperature 15.0 90 > th dose independent rect. 3 16
660 32.94 atmosphere 995.0 10 > th dose independent rect. 4 16
675 32.95 precipitation 0.1 90 < th dose independent rect. 19 8
688 32.95 humidity 90.0 30 < th dose independent rect. 20 18
693 32.95 radiation 20.0 10 < th dose independent rect. 7 23
701 32.95 precipitation 0.1 90 < th dose dependent rect. 19 8
724 32.96 temperature 10.0 90 > th dose independent rect. 19 8
726 32.96 temperature 30.0 90 < th dose independent rect. 19 8
727 32.96 humidity 50.0 90 > th dose independent rect. 19 8
729 32.96 atmosphere 995.0 90 > th dose independent rect. 19 8
730 32.96 radiation 1.0 90 < th dose independent rect. 19 8
735 32.96 precipitation 0.1 720 < th dose independent rect. 19 8
739 32.96 temperature 25.0 90 > th dose independent rect. 19 12
741 32.96 humidity 90.0 90 < th dose independent rect. 19 12
747 32.96 atmosphere 995.0 10 > th dose independent rect. 14 16
748 32.96 atmosphere 1015.0 90 < th dose independent rect. 3 16
752 32.96 humidity 90.0 720 < th dose dependent rect. 24 1
754 32.96 radiation 1.0 90 < th dose dependent rect. 19 8
759 32.96 precipitation 0.1 720 < th dose dependent rect. 19 8
766 32.97 wind 1.0 720 > th dose independent rect. 7 2
786 32.98 wind 1.0 90 > th dose independent rect. 19 8
788 32.98 temperature 25.0 30 > th dose independent rect. 4 16
789 32.98 precipitation 0.1 90 < th dose independent rect. 3 16
800 32.98 humidity 80.0 90 > th dose independent rect. 5 22
807 32.98 temperature 30.0 30 < th dose dependent rect. 6 1
823 32.98 precipitation 0.1 90 < th dose dependent rect. 3 16
840 32.99 atmosphere 1010.0 30 < th dose independent rect. 10 10
859 32.99 radiation 1.0 14400 < th dose dependent rect. 20 8
878 33.00 wind 1.0 270 < th dose independent rect. 6 1
882 33.00 humidity 70.0 720 > th dose independent rect. 19 2
897 33.00 temperature 30.0 14400 < th dose independent rect. 21 12
906 33.00 humidity 90.0 90 < th dose independent rect. 19 21
911 33.00 temperature 30.0 14400 > th dose dependent no NA NA
919 33.00 temperature 10.0 30 > th dose dependent rect. 20 7
920 33.00 temperature 20.0 30 > th dose dependent rect. 20 7