BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0103900 Os04g0103900|AK100989
(393 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G13930.1 | chr5:4488762-4490035 FORWARD LENGTH=396 301 4e-82
AT4G34850.1 | chr4:16608349-16609720 FORWARD LENGTH=393 186 2e-47
AT4G00040.1 | chr4:14653-15897 FORWARD LENGTH=386 184 7e-47
AT1G02050.1 | chr1:359164-360441 REVERSE LENGTH=396 169 3e-42
>AT5G13930.1 | chr5:4488762-4490035 FORWARD LENGTH=396
Length = 395
Score = 301 bits (771), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 152/374 (40%), Positives = 220/374 (58%), Gaps = 4/374 (1%)
Query: 16 AAILGIGTAVPPYVLPQSSFPDYYFDISNSNHLLDLKAKFADICEKTMIDKRHVHMSDEF 75
A IL IGTA P + Q+ +PDYYF I+NS H+ DLK KF +C+K+ I KRH+H+++EF
Sbjct: 22 AGILAIGTANPENHVLQAEYPDYYFRITNSEHMTDLKEKFKRMCDKSTIRKRHMHLTEEF 81
Query: 76 LRSNPSVAAYNSPSINVRQNLTDVTVPQLGXXXXXXXXXDWGRPACEITHLVMCTTVSGC 135
L+ NP + AY +PS++ RQ++ V VP+LG +WG+P +ITH+V CTT
Sbjct: 82 LKENPHMCAYMAPSLDTRQDIVVVEVPKLGKEAAVKAIKEWGQPKSKITHVVFCTTSGVD 141
Query: 136 MPGADFEVVKLLGLPLTTKRCMMYHIGCHGGGTALRLAKDLAENNPGGRXXXXXXXXXXX 195
MPGAD+++ KLLGL + KR MMY GC GGT LR+AKDLAENN G R
Sbjct: 142 MPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRIAKDLAENNRGARVLVVCSEITAV 201
Query: 196 XFRGPCESHMGNLVGQALFXXXXXXXXXXXXPVEANSERTLFEMVSAWQDIIPETEEMVV 255
FRGP ++H+ +LVGQALF P + E+ +FEMVSA Q I+P+++ +
Sbjct: 202 TFRGPSDTHLDSLVGQALFSDGAAALIVGSDPDTSVGEKPIFEMVSAAQTILPDSDGAID 261
Query: 256 AKLREEGLVYNLHRDVAARVAASMESLVKKAMVE---KDWNEEVFWLVHPGGRDILDRVV 312
LRE GL ++L +DV ++ ++ + +A DWN +FW+ HPGG ILD+V
Sbjct: 262 GHLREVGLTFHLLKDVPGLISKNIVKSLDEAFKPLGISDWN-SLFWIAHPGGPAILDQVE 320
Query: 313 LTLGLRDDKVAVCREVMRQHGNTLSSCVIXXXXXXXXXXXXXGLSTAXXXXXXXXXXXXX 372
+ LGL+++K+ R V+ ++GN S+CV+ G++T
Sbjct: 321 IKLGLKEEKMRATRHVLSEYGNMSSACVLFILDEMRRKSAKDGVATTGEGLEWGVLFGFG 380
Query: 373 XXXTVETILLRAPP 386
TVET++L + P
Sbjct: 381 PGLTVETVVLHSVP 394
>AT4G34850.1 | chr4:16608349-16609720 FORWARD LENGTH=393
Length = 392
Score = 186 bits (473), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 104/331 (31%), Positives = 171/331 (51%), Gaps = 8/331 (2%)
Query: 16 AAILGIGTAVPPYVLPQSSFPDYYFDISNSNHLLDLKAKFADICEKTMIDKRHVHMSDEF 75
A IL +G A P ++ Q D YF + + +LK K +C+ T + R+V MS+E
Sbjct: 20 ATILALGKAFPHQLVMQEYLVDGYFKTTKCDDP-ELKQKLTRLCKTTTVKTRYVVMSEEI 78
Query: 76 LRSNPSVAAYNSPSINVRQNLTDVTVPQLGXXXXXXXXXDWGRPACEITHLVMCTTVSGC 135
L+ P +A ++ R ++ + V ++ +WGR +ITH+V ++
Sbjct: 79 LKKYPELAIEGGSTVTQRLDICNDAVTEMAVEASRACIKNWGRSISDITHVVYVSSSEAR 138
Query: 136 MPGADFEVVKLLGLPLTTKRCMMYHIGCHGGGTALRLAKDLAENNPGGRXXXXXXXXXXX 195
+PG D + K LGL T R ++Y +GC GG LR+AKD+AENNPG R
Sbjct: 139 LPGGDLYLAKGLGLSPDTHRVLLYFVGCSGGVAGLRVAKDIAENNPGSRVLLATSETTII 198
Query: 196 XFRGPCESHMGNLVGQALFXXXXXXXXXXXXPVEANSERTLFEMVSAWQDIIPETEEMVV 255
F+ P +LVG ALF P + E+ LFE+ +A Q+ +PETE+ +
Sbjct: 199 GFKPPSVDRPYDLVGVALFGDGAGAMIIGSDP-DPICEKPLFELHTAIQNFLPETEKTID 257
Query: 256 AKLREEGLVYNLHRDVAARVAASMESLVKK-----AMVEKDWNEEVFWLVHPGGRDILDR 310
+L E+G+ + L R++ + ++E+ KK + K++N ++FW VHPGG IL+R
Sbjct: 258 GRLTEQGINFKLSRELPQIIEDNVENFCKKLIGKAGLAHKNYN-QMFWAVHPGGPAILNR 316
Query: 311 VVLTLGLRDDKVAVCREVMRQHGNTLSSCVI 341
+ L L +K++ R + +GN S+ ++
Sbjct: 317 IEKRLNLSPEKLSPSRRALMDYGNASSNSIV 347
>AT4G00040.1 | chr4:14653-15897 FORWARD LENGTH=386
Length = 385
Score = 184 bits (467), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 109/342 (31%), Positives = 168/342 (49%), Gaps = 9/342 (2%)
Query: 5 EYIKQGGQQLVAAILGIGTAVPPYVLPQSSFPDYYF-DISNSNHLLDLKAKFADICEKTM 63
E K+ Q A +L +G A+P V+ Q + + Y +I N L +K K +C+ T
Sbjct: 8 EKQKRVAYQGKATVLALGKALPSNVVSQENLVEEYLREIKCDN--LSIKDKLQHLCKSTT 65
Query: 64 IDKRHVHMSDEFLRSNPSVAAYNSPSINVRQNLTDVTVPQLGXXXXXXXXXDWGRPACEI 123
+ R+ MS E L P +A SP+I R + + V Q+ +WGR +I
Sbjct: 66 VKTRYTVMSRETLHKYPELATEGSPTIKQRLEIANDAVVQMAYEASLVCIKEWGRAVEDI 125
Query: 124 THLVMCTTVSGCMPGADFEVVKLLGLPLTTKRCMMYHIGCHGGGTALRLAKDLAENNPGG 183
THLV ++ +PG D + LGL +R M+Y +GC+GG + LR+AKD+AENNPG
Sbjct: 126 THLVYVSSSEFRLPGGDLYLSAQLGLSNEVQRVMLYFLGCYGGLSGLRVAKDIAENNPGS 185
Query: 184 RXXXXXXXXXXXXFRGPCESHMGNLVGQALFXXXXXXXXXXXXPVEANSERTLFEMVSAW 243
R FR P ++ NLVG ALF P E SE E+ A
Sbjct: 186 RVLLTTSETTVLGFRPPNKARPYNLVGAALFGDGAAALIIGADPTE--SESPFMELHCAM 243
Query: 244 QDIIPETEEMVVAKLREEGLVYNLHRDVAARVAASMESLVKKAMVEKDWN----EEVFWL 299
Q +P+T+ ++ +L EEG+ + L RD+ ++ ++E KK + + ++FW
Sbjct: 244 QQFLPQTQGVIDGRLSEEGITFKLGRDLPQKIEDNVEEFCKKLVAKAGSGALELNDLFWA 303
Query: 300 VHPGGRDILDRVVLTLGLRDDKVAVCREVMRQHGNTLSSCVI 341
VHPGG IL + L L+ +K+ R + +GN S+ +
Sbjct: 304 VHPGGPAILSGLETKLKLKPEKLECSRRALMDYGNVSSNTIF 345
>AT1G02050.1 | chr1:359164-360441 REVERSE LENGTH=396
Length = 395
Score = 169 bits (428), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 101/331 (30%), Positives = 164/331 (49%), Gaps = 9/331 (2%)
Query: 16 AAILGIGTAVPPYVLPQSSFPDYYFDISNSNHLLDLKAKFADICEKTMIDKRHVHMSDEF 75
A +L +G A P V+PQ + + + + + +K K +C+ T + R+ ++ E
Sbjct: 26 ATLLALGKAFPSQVVPQENLVEGFLRDTKCDDAF-IKEKLEHLCKTTTVKTRYTVLTREI 84
Query: 76 LRSNPSVAAYNSPSINVRQNLTDVTVPQLGXXXXXXXXXDWGRPACEITHLVMCTTVSGC 135
L P + SP+I R + + V ++ +WGRP +ITH+V ++
Sbjct: 85 LAKYPELTTEGSPTIKQRLEIANEAVVEMALEASLGCIKEWGRPVEDITHIVYVSSSEIR 144
Query: 136 MPGADFEVVKLLGLPLTTKRCMMYHIGCHGGGTALRLAKDLAENNPGGRXXXXXXXXXXX 195
+PG D + LGL R M+Y +GC+GG T LR+AKD+AENNPG R
Sbjct: 145 LPGGDLYLSAKLGLRNDVNRVMLYFLGCYGGVTGLRVAKDIAENNPGSRVLLTTSETTIL 204
Query: 196 XFRGPCESHMGNLVGQALFXXXXXXXXXXXXPVEANSERTLFEMVSAWQDIIPETEEMVV 255
FR P ++ +LVG ALF P E E E+ A Q +P T+ ++
Sbjct: 205 GFRPPNKARPYDLVGAALFGDGAAAVIIGADPREC--EAPFMELHYAVQQFLPGTQNVIE 262
Query: 256 AKLREEGLVYNLHRDVAARVAASMESLVKKAMVEK-----DWNEEVFWLVHPGGRDILDR 310
+L EEG+ + L RD+ ++ ++E KK M + ++N ++FW VHPGG IL+R
Sbjct: 263 GRLTEEGINFKLGRDLPQKIEENIEEFCKKLMGKAGDESMEFN-DMFWAVHPGGPAILNR 321
Query: 311 VVLTLGLRDDKVAVCREVMRQHGNTLSSCVI 341
+ L L +K+ R + +GN S+ ++
Sbjct: 322 LETKLKLEKEKLESSRRALVDYGNVSSNTIL 352
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.135 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,261,241
Number of extensions: 266209
Number of successful extensions: 607
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 600
Number of HSP's successfully gapped: 4
Length of query: 393
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 292
Effective length of database: 8,337,553
Effective search space: 2434565476
Effective search space used: 2434565476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)