Os03g0860000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0860000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 92.73 | 0.452 | 6.63 | -1.13 | 0.712 | -0.273 | 0.515 | 3.46 | -0.271 | 4.79 | 18.89 | 257 | -- | -- |
| 99.28 | 0.464 | 6.69 | -1.57 | 0.8 | -0.375 | -0.0162 | -- | -0.366 | 4.7 | 13.17 | 9845 | -- | -- |
| 93.23 | 0.45 | 6.64 | -1.22 | 0.713 | -0.267 | -- | 3.01 | -0.296 | 4.83 | 18.77 | 250 | -- | -- |
| 99.2 | 0.464 | 6.68 | -1.6 | 0.777 | -0.359 | -- | -- | -0.361 | 4.71 | 0.9223 | 9709 | -- | -- |
| 107.77 | 0.483 | 6.64 | -1.13 | -- | -1.09 | -- | 4.3 | -0.286 | -- | 24.8 | 298 | -- | -- |
| 100.79 | 0.471 | 6.71 | -1.81 | 0.769 | -- | -0.46 | -- | -0.476 | 4.78 | -- | -- | -- | -- |
| 101.34 | 0.471 | 6.71 | -1.81 | 0.766 | -- | -- | -- | -0.474 | 4.79 | -- | -- | -- | -- |
| 118.59 | 0.507 | 6.71 | -1.65 | -- | -0.674 | -- | -- | -0.387 | -- | 24.82 | 269 | -- | -- |
| 117.67 | 0.505 | 6.57 | -- | 0.777 | -1.34 | -- | -- | 0.129 | 4.68 | -1.599 | 47520 | -- | -- |
| 132.36 | 0.538 | 6.71 | -1.78 | -- | -- | -- | -- | -0.454 | -- | -- | -- | -- | -- |
| 187.35 | 0.64 | 6.66 | -- | 0.733 | -- | -- | -- | -0.272 | 4.86 | -- | -- | -- | -- |
| 149.72 | 0.57 | 6.58 | -- | -- | -1.31 | -- | -- | 0.134 | -- | -2.779 | 47520 | -- | -- |
| 215.73 | 0.686 | 6.67 | -- | -- | -- | -- | -- | -0.257 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 89.45 | temperature | 20 | 30 | > th | dose dependent | rect. | 16 | 11 |
| 3 | 89.91 | temperature | 20 | 270 | > th | dose dependent | rect. | 8 | 18 |
| 7 | 90.23 | wind | 3 | 43200 | < th | dose dependent | rect. | 20 | 4 |
| 13 | 90.50 | temperature | 20 | 30 | > th | dose dependent | rect. | 16 | 14 |
| 35 | 91.23 | temperature | 20 | 90 | > th | dose dependent | rect. | 11 | 16 |
| 38 | 91.27 | wind | 1 | 43200 | > th | dose independent | rect. | 22 | 4 |
| 41 | 91.35 | wind | 1 | 43200 | < th | dose independent | rect. | 21 | 5 |
| 45 | 91.43 | temperature | 25 | 720 | < th | dose independent | rect. | 1 | 1 |
| 55 | 91.54 | wind | 1 | 43200 | < th | dose independent | rect. | 23 | 3 |
| 57 | 91.56 | temperature | 25 | 30 | > th | dose independent | rect. | 22 | 11 |
| 63 | 91.61 | temperature | 20 | 720 | > th | dose dependent | rect. | 9 | 3 |
| 71 | 91.68 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 6 |
| 75 | 91.70 | temperature | 15 | 30 | > th | dose dependent | rect. | 16 | 21 |
| 78 | 91.71 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 85 | 91.77 | atmosphere | 995 | 720 | > th | dose independent | rect. | 16 | 1 |
| 87 | 91.78 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 88 | 91.78 | atmosphere | 995 | 720 | > th | dose independent | rect. | 16 | 10 |
| 89 | 91.79 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 16 | 14 |
| 90 | 91.80 | temperature | 25 | 270 | > th | dose independent | rect. | 3 | 4 |
| 95 | 91.83 | wind | 5 | 10 | < th | dose independent | rect. | 13 | 12 |
| 99 | 91.86 | wind | 5 | 90 | < th | dose independent | rect. | 13 | 11 |
| 101 | 91.87 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 108 | 91.92 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 112 | 91.95 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 17 | 23 |
| 126 | 92.07 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 129 | 92.11 | humidity | 90 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 134 | 92.11 | temperature | 15 | 30 | > th | dose dependent | rect. | 9 | 21 |
| 141 | 92.15 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 1 |
| 149 | 92.17 | temperature | 20 | 90 | > th | dose dependent | rect. | 16 | 1 |
| 160 | 92.23 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 1 | 12 |
| 162 | 92.24 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 1 | 1 |
| 163 | 92.24 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 9 | 21 |
| 177 | 92.30 | temperature | 25 | 90 | > th | dose independent | rect. | 16 | 1 |
| 180 | 92.31 | humidity | 90 | 720 | < th | dose independent | rect. | 16 | 1 |
| 181 | 92.31 | wind | 1 | 43200 | < th | dose independent | rect. | 16 | 10 |
| 188 | 92.33 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 194 | 92.35 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 196 | 92.35 | wind | 1 | 30 | > th | dose independent | rect. | 17 | 23 |
| 214 | 92.40 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 217 | 92.42 | wind | 1 | 43200 | < th | dose dependent | rect. | 12 | 14 |
| 220 | 92.44 | temperature | 20 | 720 | > th | dose dependent | sin | 3 | NA |
| 232 | 92.47 | temperature | 25 | 720 | > th | dose independent | rect. | 9 | 3 |
| 233 | 92.47 | temperature | 15 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 235 | 92.47 | temperature | 25 | 30 | > th | dose dependent | rect. | 16 | 6 |
| 245 | 92.49 | atmosphere | 995 | 720 | > th | dose independent | rect. | 24 | 17 |
| 259 | 92.53 | atmosphere | 995 | 720 | > th | dose independent | rect. | 15 | 12 |
| 271 | 92.55 | wind | 1 | 43200 | > th | dose independent | rect. | 16 | 10 |
| 282 | 92.57 | temperature | 20 | 10 | > th | dose independent | rect. | 9 | 21 |
| 299 | 92.60 | atmosphere | 995 | 720 | > th | dose independent | rect. | 14 | 14 |
| 325 | 92.64 | wind | 9 | 90 | < th | dose dependent | rect. | 13 | 11 |
| 328 | 92.64 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 18 |
| 337 | 92.66 | temperature | 30 | 10 | < th | dose independent | rect. | 17 | 23 |
| 341 | 92.66 | wind | 9 | 10 | < th | dose dependent | rect. | 13 | 12 |
| 356 | 92.68 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 372 | 92.70 | temperature | 25 | 10 | > th | dose dependent | rect. | 22 | 9 |
| 375 | 92.71 | wind | 9 | 720 | < th | dose dependent | rect. | 12 | 2 |
| 399 | 92.75 | temperature | 25 | 30 | > th | dose independent | rect. | 1 | 8 |
| 439 | 92.79 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 450 | 92.80 | humidity | 60 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 457 | 92.81 | atmosphere | 995 | 720 | > th | dose independent | rect. | 14 | 23 |
| 502 | 92.87 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 527 | 92.90 | wind | 1 | 43200 | < th | dose dependent | sin | 16 | NA |
| 534 | 92.91 | wind | 5 | 720 | < th | dose dependent | rect. | 12 | 1 |
| 544 | 92.92 | temperature | 20 | 90 | > th | dose dependent | sin | 18 | NA |
| 549 | 92.93 | wind | 1 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 550 | 92.93 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 1 |
| 557 | 92.93 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 11 |
| 563 | 92.94 | wind | 3 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 599 | 92.97 | wind | 3 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 607 | 92.97 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 609 | 92.98 | atmosphere | 1010 | 720 | < th | dose independent | rect. | 1 | 1 |
| 611 | 92.98 | wind | 1 | 43200 | > th | dose independent | rect. | 14 | 12 |
| 613 | 92.98 | temperature | 20 | 10 | > th | dose dependent | sin | 17 | NA |
| 640 | 93.00 | wind | 3 | 720 | < th | dose independent | rect. | 11 | 2 |
| 657 | 93.01 | temperature | 10 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 658 | 93.02 | wind | 1 | 43200 | < th | dose independent | sin | 15 | NA |
| 659 | 93.02 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 689 | 93.04 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 707 | 93.06 | humidity | 80 | 43200 | > th | dose independent | rect. | 17 | 8 |
| 709 | 93.06 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 16 | 1 |
| 721 | 93.07 | temperature | 20 | 270 | > th | dose dependent | sin | 20 | NA |
| 741 | 93.09 | atmosphere | 995 | 720 | > th | dose independent | rect. | 15 | 20 |
| 753 | 93.09 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 20 |
| 769 | 93.10 | temperature | 20 | 720 | > th | dose dependent | rect. | 24 | 17 |
| 770 | 93.10 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 18 |
| 775 | 93.11 | radiation | 1 | 90 | > th | dose independent | rect. | 16 | 1 |
| 788 | 93.12 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 789 | 93.12 | radiation | 1 | 30 | > th | dose independent | rect. | 16 | 3 |
| 792 | 93.12 | humidity | 80 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 826 | 93.14 | wind | 1 | 43200 | > th | dose independent | sin | 15 | NA |
| 847 | 93.15 | atmosphere | 995 | 720 | > th | dose independent | rect. | 15 | 4 |
| 883 | 93.18 | humidity | 80 | 43200 | < th | dose independent | rect. | 17 | 8 |
| 884 | 93.18 | temperature | 20 | 30 | > th | dose independent | rect. | 9 | 19 |
| 895 | 93.19 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 900 | 93.19 | temperature | 25 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 908 | 93.19 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 12 |
| 922 | 93.21 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 16 | 1 |
| 935 | 93.22 | temperature | 25 | 10 | > th | dose independent | rect. | 16 | 2 |
| 937 | 93.22 | wind | 3 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 939 | 93.22 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 5 |
| 961 | 93.23 | temperature | 20 | 1440 | > th | dose dependent | sin | 8 | NA |
| 981 | 93.24 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 5 |
| 986 | 93.24 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 18 |