BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0860000 Os03g0860000|AK066505
         (134 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G20410.1  | chr2:8802561-8804194 FORWARD LENGTH=340            221   8e-59

>AT2G20410.1 | chr2:8802561-8804194 FORWARD LENGTH=340
          Length = 339

 Score =  221 bits (563), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 96/123 (78%), Positives = 109/123 (88%)

Query: 7   GRLRNPCLTMHQPWASLLVHGIKRVEGRSWPSPLTGRLWIHAASKVPEADTIKAMEEFYR 66
           G  +NPCLTMHQPWASLLVHGIKR+EGRSWPSP+ GRLWIHAASKVP+  TIKAMEEFY+
Sbjct: 4   GNYKNPCLTMHQPWASLLVHGIKRIEGRSWPSPIRGRLWIHAASKVPDEATIKAMEEFYQ 63

Query: 67  EIYALDGITNITFPHHYPVSRLLGCVEVVGCVTSQELASWEHVPQSVRLEALTDFCWLCE 126
           +IYA+DGIT+I FP HYPVSRL+GCVEVVGCVTS EL +W+ +PQ VRLE  T+FCWLCE
Sbjct: 64  QIYAVDGITDIQFPQHYPVSRLIGCVEVVGCVTSDELQNWDALPQGVRLEGQTNFCWLCE 123

Query: 127 NPQ 129
            PQ
Sbjct: 124 KPQ 126



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.136    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,096,680
Number of extensions: 112328
Number of successful extensions: 247
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 247
Number of HSP's successfully gapped: 1
Length of query: 134
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 46
Effective length of database: 8,693,961
Effective search space: 399922206
Effective search space used: 399922206
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 106 (45.4 bits)