Os03g0858700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1499 family protein.
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Os03g0858700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1499 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 163.36 | 0.601 | 7.79 | 0.691 | 1.55 | -0.77 | 0.354 | 1.23 | -0.536 | 20.2 | 20.3 | 106 | -- | -- |
| 170.85 | 0.609 | 7.81 | 0.548 | 1.53 | -0.845 | 0.106 | -- | -0.551 | 20.2 | 20.3 | 139 | -- | -- |
| 163.61 | 0.596 | 7.79 | 0.671 | 1.55 | -0.764 | -- | 1.21 | -0.529 | 20.2 | 20.4 | 105 | -- | -- |
| 169.39 | 0.606 | 7.82 | 0.57 | 1.57 | -1.07 | -- | -- | -0.573 | 20.1 | 19.4 | 172 | -- | -- |
| 293.62 | 0.798 | 7.75 | 0.654 | -- | -0.856 | -- | 1.27 | -0.509 | -- | 20.31 | 76 | -- | -- |
| 198.28 | 0.66 | 7.85 | 0.247 | 1.59 | -- | 0.0805 | -- | -0.739 | 20.6 | -- | -- | -- | -- |
| 198.31 | 0.659 | 7.85 | 0.245 | 1.59 | -- | -- | -- | -0.739 | 20.6 | -- | -- | -- | -- |
| 299.86 | 0.807 | 7.77 | 0.485 | -- | -0.959 | -- | -- | -0.579 | -- | 20.33 | 60 | -- | -- |
| 176.57 | 0.619 | 7.83 | -- | 1.53 | -0.778 | -- | -- | -0.636 | 20.2 | 20.4 | 139 | -- | -- |
| 339.82 | 0.861 | 7.81 | 0.24 | -- | -- | -- | -- | -0.753 | -- | -- | -- | -- | -- |
| 199.88 | 0.661 | 7.86 | -- | 1.59 | -- | -- | -- | -0.766 | 20.6 | -- | -- | -- | -- |
| 305.82 | 0.814 | 7.78 | -- | -- | -0.873 | -- | -- | -0.639 | -- | 20.4 | 52 | -- | -- |
| 341.34 | 0.862 | 7.82 | -- | -- | -- | -- | -- | -0.78 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 158.05 | temperature | 20.0 | 90 | < th | dose independent | rect. | 23 | 13 |
| 4 | 158.71 | temperature | 20.0 | 90 | < th | dose independent | rect. | 21 | 16 |
| 6 | 158.93 | temperature | 20.0 | 90 | < th | dose independent | sin | 7 | NA |
| 30 | 160.94 | temperature | 20.0 | 90 | < th | dose independent | rect. | 17 | 20 |
| 71 | 162.73 | temperature | 20.0 | 90 | < th | dose independent | rect. | 21 | 21 |
| 81 | 162.96 | temperature | 20.0 | 90 | > th | dose independent | rect. | 13 | 23 |
| 93 | 163.18 | temperature | 20.0 | 30 | > th | dose independent | rect. | 11 | 23 |
| 100 | 163.29 | temperature | 20.0 | 90 | > th | dose independent | sin | 5 | NA |
| 124 | 163.72 | temperature | 20.0 | 90 | > th | dose independent | rect. | 15 | 23 |
| 139 | 164.07 | temperature | 25.0 | 10 | < th | dose dependent | sin | 7 | NA |
| 170 | 164.69 | temperature | 20.0 | 90 | > th | dose independent | rect. | 19 | 23 |
| 181 | 164.90 | temperature | 20.0 | 30 | > th | dose independent | rect. | 20 | 16 |
| 183 | 164.94 | temperature | 20.0 | 90 | > th | dose independent | no | NA | NA |
| 189 | 165.03 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 17 | 19 |
| 191 | 165.04 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 20 | 16 |
| 197 | 165.13 | temperature | 20.0 | 90 | > th | dose independent | rect. | 24 | 23 |
| 198 | 165.15 | wind | 1.0 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 203 | 165.24 | temperature | 20.0 | 90 | < th | dose independent | no | NA | NA |
| 209 | 165.30 | temperature | 20.0 | 90 | > th | dose independent | rect. | 4 | 23 |
| 239 | 165.82 | temperature | 20.0 | 90 | < th | dose independent | rect. | 9 | 23 |
| 257 | 165.96 | temperature | 20.0 | 90 | < th | dose independent | rect. | 3 | 23 |
| 261 | 166.03 | temperature | 20.0 | 90 | < th | dose independent | rect. | 7 | 23 |
| 273 | 166.22 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 7 | 5 |
| 294 | 166.46 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 8 | 2 |
| 304 | 166.51 | temperature | 20.0 | 90 | > th | dose independent | rect. | 15 | 21 |
| 311 | 166.55 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 23 | 10 |
| 316 | 166.58 | temperature | 20.0 | 90 | < th | dose independent | rect. | 1 | 23 |
| 319 | 166.63 | temperature | 20.0 | 90 | < th | dose independent | rect. | 11 | 23 |
| 361 | 166.96 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 9 | 2 |
| 370 | 167.02 | wind | 1.0 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 410 | 167.34 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 23 | 12 |
| 414 | 167.39 | temperature | 20.0 | 90 | < th | dose independent | rect. | 5 | 23 |
| 476 | 167.69 | temperature | 25.0 | 14400 | < th | dose dependent | sin | 0 | NA |
| 585 | 168.30 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 602 | 168.35 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 4 |
| 634 | 168.48 | temperature | 20.0 | 270 | > th | dose independent | rect. | 11 | 23 |
| 674 | 168.67 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 9 | 13 |
| 679 | 168.68 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 743 | 168.88 | temperature | 20.0 | 90 | > th | dose independent | rect. | 9 | 23 |
| 745 | 168.89 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 4 |
| 747 | 168.89 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 6 | 16 |
| 750 | 168.89 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 4 |
| 792 | 169.01 | temperature | 20.0 | 14400 | < th | dose independent | sin | 20 | NA |
| 817 | 169.07 | temperature | 20.0 | 14400 | > th | dose independent | sin | 21 | NA |
| 818 | 169.07 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 4 |
| 823 | 169.07 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 4 |
| 824 | 169.07 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 15 | 6 |
| 829 | 169.08 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 10 | 11 |
| 869 | 169.14 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 17 | 3 |
| 892 | 169.18 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 937 | 169.27 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 20 | 22 |
| 938 | 169.27 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 20 | 23 |
| 940 | 169.28 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 944 | 169.28 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 1 |