BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0858700 Os03g0858700|AK061723
         (213 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G60810.1  | chr3:22470579-22471756 FORWARD LENGTH=215          234   4e-62

>AT3G60810.1 | chr3:22470579-22471756 FORWARD LENGTH=215
          Length = 214

 Score =  234 bits (596), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 110/175 (62%), Positives = 131/175 (74%), Gaps = 4/175 (2%)

Query: 38  IARREFVLRSSELATLAAIFHLSGTKPRYLGVQKSPPSLALCPATNNCVSTCEDITDSIH 97
           I RR+ +LRSSELA + AIF LSG KP YLGVQK+   LALCPATNNC+ST E+I+D +H
Sbjct: 43  IGRRDIILRSSELAMIGAIFQLSGKKPDYLGVQKNE-RLALCPATNNCISTSENISDRVH 101

Query: 98  YAPPWNYNPKDGRRAKPITKHEAINQLIQVVTQTKPDNFTPRLVEKTDDYVRVEYESPIF 157
           YAPPWNYN   G R  P+ +  A+ +L+ V+   KPD FTPR+VEK DDYV VEYESPI 
Sbjct: 102 YAPPWNYN---GGRKTPVNRQVAMKELLNVIKSVKPDKFTPRIVEKKDDYVHVEYESPIL 158

Query: 158 GFVDDVEFWFPPGNKSIVQYRSASRSGFIDFNANKKRVKALRLALENKGWASEST 212
           G VDDVEF F PG  S V+YRSASR G  DF+ N+KR+KALR  LE KGW SE++
Sbjct: 159 GLVDDVEFLFTPGKNSKVEYRSASRKGNFDFDVNRKRIKALRQELEKKGWVSENS 213



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.133    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,969,351
Number of extensions: 166743
Number of successful extensions: 326
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 324
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 119
Effective length of database: 8,529,465
Effective search space: 1015006335
Effective search space used: 1015006335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)