Os03g0856900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os03g0856900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 92.9 | 0.453 | 10.9 | -0.307 | 2.09 | -1.36 | -0.977 | -0.253 | 0.0435 | 21.6 | 23.42 | 577 | -- | -- |
| 92.97 | 0.449 | 10.9 | -0.335 | 2.09 | -1.31 | -0.926 | -- | 0.0354 | 21.5 | 23.5 | 586 | -- | -- |
| 95.89 | 0.456 | 10.9 | -0.384 | 2.1 | -1.23 | -- | 0.494 | 0.0171 | 21.5 | 23.7 | 645 | -- | -- |
| 96.12 | 0.457 | 10.9 | -0.312 | 2.1 | -1.32 | -- | -- | 0.0402 | 21.5 | 23.44 | 603 | -- | -- |
| 289.17 | 0.792 | 10.9 | -0.934 | -- | -2.8 | -- | 1.63 | -0.243 | -- | 66.28 | 697 | -- | -- |
| 115.73 | 0.504 | 10.9 | -0.00335 | 2.22 | -- | -0.982 | -- | 0.258 | 21.5 | -- | -- | -- | -- |
| 119.27 | 0.511 | 10.9 | 0.0339 | 2.23 | -- | -- | -- | 0.26 | 21.5 | -- | -- | -- | -- |
| 291.25 | 0.795 | 10.9 | -0.639 | -- | -2.78 | -- | -- | -0.165 | -- | 57.55 | 691 | -- | -- |
| 98.4 | 0.462 | 10.9 | -- | 2.11 | -1.18 | -- | -- | 0.0636 | 21.5 | 23.53 | 602 | -- | -- |
| 411.74 | 0.948 | 10.8 | 0.0486 | -- | -- | -- | -- | 0.254 | -- | -- | -- | -- | -- |
| 119.3 | 0.511 | 10.9 | -- | 2.23 | -- | -- | -- | 0.257 | 21.5 | -- | -- | -- | -- |
| 300.99 | 0.808 | 10.9 | -- | -- | -2.54 | -- | -- | -0.0642 | -- | 68.21 | 685 | -- | -- |
| 411.8 | 0.947 | 10.8 | -- | -- | -- | -- | -- | 0.248 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 81.42 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 9 | 83.54 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 12 |
| 27 | 85.18 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 7 |
| 30 | 85.45 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 7 |
| 40 | 85.76 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 5 |
| 55 | 86.33 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 7 |
| 73 | 86.92 | temperature | 20 | 720 | > th | dose independent | sin | 10 | NA |
| 92 | 87.37 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 17 |
| 108 | 87.67 | temperature | 10 | 720 | > th | dose dependent | sin | 10 | NA |
| 115 | 87.76 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 12 |
| 132 | 88.00 | temperature | 20 | 720 | < th | dose independent | sin | 9 | NA |
| 133 | 88.00 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 9 |
| 143 | 88.10 | temperature | 25 | 720 | < th | dose dependent | sin | 9 | NA |
| 164 | 88.30 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 253 | 89.13 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 17 |
| 267 | 89.26 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 20 |
| 324 | 89.72 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 394 | 90.24 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 2 |
| 468 | 90.82 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 20 |
| 609 | 91.80 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 18 |
| 645 | 92.01 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 1 |
| 687 | 92.20 | temperature | 10 | 30 | > th | dose dependent | rect. | 6 | 14 |
| 708 | 92.37 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 940 | 93.44 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 23 |
| 945 | 93.46 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 4 |
| 987 | 93.61 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 11 | 12 |
| 994 | 93.63 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 14 |
| 995 | 93.63 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 22 |