Os03g0856500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Plastid-specific 30S ribosomal protein 1, chloroplast precursor (CS- S5) (CS5) (S22) (Ribosomal protein 1) (PSRP-1).
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Os03g0856500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Plastid-specific 30S ribosomal protein 1, chloroplast precursor (CS- S5) (CS5) (S22) (Ribosomal protein 1) (PSRP-1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 469.03 | 1.02 | 12.4 | -0.39 | 3.34 | -2.86 | 4.04 | 2.01 | 0.755 | 20 | 80 | 1432 | 6.05 | 8.53 |
| 473.06 | 1.01 | 12.4 | -0.621 | 3.38 | -2.6 | 4.05 | -- | 0.706 | 20.1 | 80 | 1408 | 6.27 | 8.67 |
| 514.3 | 1.06 | 12.3 | -0.481 | 3.42 | -2.71 | -- | 2.16 | 0.858 | 20.2 | 79.95 | 1386 | 6.73 | 7.87 |
| 519.64 | 1.06 | 12.4 | -0.794 | 3.46 | -2.51 | -- | -- | 0.682 | 20.2 | 79.92 | 1396 | 6.91 | 8.05 |
| 1073.67 | 1.53 | 12.3 | -0.288 | -- | -3.42 | -- | 3.16 | 0.614 | -- | 80 | 1546 | 6.63 | 7.6 |
| 631.27 | 1.18 | 12.5 | -1.17 | 3.33 | -- | 3.85 | -- | 0.314 | 19.9 | -- | -- | -- | -- |
| 674.6 | 1.22 | 12.5 | -1.28 | 3.32 | -- | -- | -- | 0.317 | 20 | -- | -- | -- | -- |
| 1071.82 | 1.52 | 12.3 | -0.768 | -- | -3.4 | -- | -- | 0.546 | -- | 79.99 | 1577 | 6.03 | 7.57 |
| 533.68 | 1.08 | 12.4 | -- | 3.47 | -2.6 | -- | -- | 0.802 | 20.2 | 79.96 | 1385 | 6.92 | 8.1 |
| 1275.85 | 1.67 | 12.4 | -1.31 | -- | -- | -- | -- | 0.274 | -- | -- | -- | -- | -- |
| 717.74 | 1.25 | 12.4 | -- | 3.33 | -- | -- | -- | 0.46 | 19.9 | -- | -- | -- | -- |
| 1085.61 | 1.53 | 12.3 | -- | -- | -3.82 | -- | -- | 0.631 | -- | 79.82 | 1557 | 5.65 | 7.98 |
| 1321.33 | 1.7 | 12.4 | -- | -- | -- | -- | -- | 0.42 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 470.67 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 6 | 9 |
| 9 | 473.84 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 37 | 480.96 | humidity | 80.0 | 1440 | < th | dose independent | sin | 3 | NA |
| 51 | 483.37 | humidity | 80.0 | 1440 | > th | dose independent | sin | 3 | NA |
| 94 | 490.80 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 107 | 493.46 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 3 | 12 |
| 114 | 494.32 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 141 | 496.22 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 2 | NA |
| 150 | 496.90 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 16 | 8 |
| 181 | 499.14 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 4 | 12 |
| 189 | 499.43 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 7 | 8 |
| 256 | 502.18 | humidity | 50.0 | 1440 | > th | dose dependent | sin | 1 | NA |
| 330 | 503.99 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 18 | 20 |
| 366 | 504.68 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 394 | 505.10 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 18 | 4 |
| 415 | 505.24 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 438 | 505.72 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 485 | 506.35 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 17 | 21 |
| 493 | 506.55 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 533 | 507.18 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 538 | 507.22 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 17 | 21 |
| 571 | 507.82 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 12 | 12 |
| 580 | 508.06 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 597 | 508.28 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 671 | 509.23 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 692 | 509.50 | humidity | 80.0 | 1440 | < th | dose dependent | no | NA | NA |
| 694 | 509.51 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 6 | 22 |
| 735 | 509.74 | humidity | 90.0 | 720 | > th | dose independent | rect. | 20 | 3 |
| 757 | 510.10 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 20 | 8 |
| 759 | 510.17 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 24 | 4 |
| 821 | 511.23 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 845 | 511.42 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 22 | NA |
| 859 | 511.62 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 881 | 511.93 | humidity | 70.0 | 720 | > th | dose independent | rect. | 16 | 17 |
| 912 | 512.59 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 8 | 10 |
| 921 | 512.74 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 935 | 512.82 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 8 | 13 |
| 939 | 512.84 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 8 | 19 |
| 944 | 512.87 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 8 | 17 |